# Assembly Statistics Report # Assembly name: S.alba_v1 # Organism name: Sinapis alba (white mustard) # Infraspecific name: strain=S2 GC0560-79 # Taxid: 3728 # BioSample: SAMN02744833 # BioProject: PRJNA214277 # Submitter: DOE Joint Genome Institute # Date: 2020-10-05 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: WIDR02 # Assembly method: discovarDeNovo v. 51464 # Genome coverage: 100x # Sequencing technology: Illumina NovaSeq 6000 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_012274485.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_012274495.2 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 449668332 all all all all spanned-gaps 18415 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 12410 all all all all scaffold-N50 181025 all all all all scaffold-L50 584 all all all all scaffold-N75 66325 all all all all scaffold-N90 21132 all all all all contig-count 30825 all all all all contig-N50 98426 all all all all contig-L50 1038 all all all all total-gap-length 30867474 all all all all molecule-count 0 all all all all top-level-count 12410 all all all all component-count 30819 Primary Assembly all all all total-length 449668332 Primary Assembly all all all ungapped-length 418800858 Primary Assembly all all all scaffold-count 12410 Primary Assembly all all all scaffold-N50 181025 Primary Assembly all all all spanned-gaps 18415 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule scaffold-count 0 Primary Assembly all all assembled-molecule scaffold-N50 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 449668332 Primary Assembly na na unplaced-scaffold ungapped-length 418800858 Primary Assembly na na unplaced-scaffold scaffold-count 12410 Primary Assembly na na unplaced-scaffold scaffold-N50 181025 Primary Assembly na na unplaced-scaffold spanned-gaps 18415 Primary Assembly na na unplaced-scaffold unspanned-gaps 0