# Assembly Statistics Report # Assembly name: RchiOBHm-V2 # Organism name: Rosa chinensis (China rose) # Infraspecific name: cultivar=Old Blush # Taxid: 74649 # BioSample: SAMN07737764 # BioProject: PRJNA413292 # Submitter: INRA/CNRS # Date: 2019-01-15 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: PDCK01 # Assembly method: TIL-R v. Rev: 523; CANU v. 1.6 # Expected final version: no # Genome coverage: 80.0x # RefSeq category: Representative Genome # GenBank assembly accession: GCA_002994745.2 # RefSeq assembly accession: GCF_002994745.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_002994755.2 GCF_002994755.2 Primary Assembly ## GCA_002994765.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 515118979 all all all all spanned-gaps 33 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 53 all all all all scaffold-N50 69643165 all all all all scaffold-L50 4 all all all all scaffold-N75 68490202 all all all all scaffold-N90 49737312 all all all all contig-count 86 all all all all contig-N50 22201688 all all all all contig-L50 9 all all all all total-gap-length 3300 all all all all molecule-count 7 all all all all top-level-count 53 all all all all component-count 53 Primary Assembly all all all total-length 515118979 Primary Assembly all all all ungapped-length 515115679 Primary Assembly all all all scaffold-count 53 Primary Assembly all all all scaffold-N50 69643165 Primary Assembly all all all spanned-gaps 33 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 503912928 Primary Assembly all all assembled-molecule ungapped-length 503909628 Primary Assembly all all assembled-molecule scaffold-count 7 Primary Assembly all all assembled-molecule scaffold-N50 69643165 Primary Assembly all all assembled-molecule spanned-gaps 33 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 11206051 Primary Assembly na na unplaced-scaffold ungapped-length 11206051 Primary Assembly na na unplaced-scaffold scaffold-count 46 Primary Assembly na na unplaced-scaffold scaffold-N50 251379 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 68490202 Primary Assembly 1 Chromosome all ungapped-length 68489802 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 68490202 Primary Assembly 1 Chromosome all spanned-gaps 4 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 68490202 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 68489802 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 68490202 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 4 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 88556329 Primary Assembly 2 Chromosome all ungapped-length 88555429 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 88556329 Primary Assembly 2 Chromosome all spanned-gaps 9 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 88556329 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 88555429 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 88556329 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 9 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 49737312 Primary Assembly 3 Chromosome all ungapped-length 49737212 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 49737312 Primary Assembly 3 Chromosome all spanned-gaps 1 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 49737312 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 49737212 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 49737312 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 1 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 67241324 Primary Assembly 4 Chromosome all ungapped-length 67241124 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 67241324 Primary Assembly 4 Chromosome all spanned-gaps 2 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 67241324 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 67241124 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 67241324 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 2 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 89953796 Primary Assembly 5 Chromosome all ungapped-length 89953196 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 89953796 Primary Assembly 5 Chromosome all spanned-gaps 6 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 89953796 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 89953196 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 89953796 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 6 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 69643165 Primary Assembly 6 Chromosome all ungapped-length 69642565 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 69643165 Primary Assembly 6 Chromosome all spanned-gaps 6 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 69643165 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 69642565 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 69643165 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 6 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 70290800 Primary Assembly 7 Chromosome all ungapped-length 70290300 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 70290800 Primary Assembly 7 Chromosome all spanned-gaps 5 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 70290800 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 70290300 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 70290800 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 5 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0