# Assembly Statistics Report # Assembly name: ASM1890193v1 # Organism name: Pugionium cornutum (eudicots) # Isolate: SCU-Liu-2020 # Taxid: 557876 # BioSample: SAMN17077276 # BioProject: PRJNA685118 # Submitter: SiChuan University # Date: 2021-06-16 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAENJI01 # Assembly method: MaSuRCA v. 3.2.1 # Expected final version: yes # Genome coverage: 221.0x # Sequencing technology: Oxford Nanopore # RefSeq category: Representative Genome # GenBank assembly accession: GCA_018901935.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018901975.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 550389588 all all all all spanned-gaps 3523 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 1919 all all all all scaffold-N50 37095732 all all all all scaffold-L50 7 all all all all scaffold-N75 28879643 all all all all scaffold-N90 99244 all all all all contig-count 5442 all all all all contig-N50 303109 all all all all contig-L50 318 all all all all total-gap-length 1801319 all all all all molecule-count 11 all all all all top-level-count 1919 all all all all component-count 1919 Primary Assembly all all all total-length 550389588 Primary Assembly all all all ungapped-length 548588269 Primary Assembly all all all scaffold-count 1919 Primary Assembly all all all scaffold-N50 37095732 Primary Assembly all all all spanned-gaps 3523 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 415885320 Primary Assembly all all assembled-molecule ungapped-length 414912580 Primary Assembly all all assembled-molecule scaffold-count 11 Primary Assembly all all assembled-molecule scaffold-N50 40602636 Primary Assembly all all assembled-molecule spanned-gaps 2124 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 134504268 Primary Assembly na na unplaced-scaffold ungapped-length 133675689 Primary Assembly na na unplaced-scaffold scaffold-count 1908 Primary Assembly na na unplaced-scaffold scaffold-N50 194844 Primary Assembly na na unplaced-scaffold spanned-gaps 1399 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 37095732 Primary Assembly 1 Chromosome all ungapped-length 37001995 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 37095732 Primary Assembly 1 Chromosome all spanned-gaps 207 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 37095732 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 37001995 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 37095732 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 207 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 31729236 Primary Assembly 2 Chromosome all ungapped-length 31640128 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 31729236 Primary Assembly 2 Chromosome all spanned-gaps 197 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 31729236 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 31640128 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 31729236 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 197 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 39900051 Primary Assembly 3 Chromosome all ungapped-length 39813483 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 39900051 Primary Assembly 3 Chromosome all spanned-gaps 176 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 39900051 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 39813483 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 39900051 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 176 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 29660029 Primary Assembly 4 Chromosome all ungapped-length 29616864 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 29660029 Primary Assembly 4 Chromosome all spanned-gaps 97 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 29660029 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 29616864 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 29660029 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 97 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 43171115 Primary Assembly 5 Chromosome all ungapped-length 43066808 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 43171115 Primary Assembly 5 Chromosome all spanned-gaps 234 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 43171115 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 43066808 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 43171115 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 234 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 35507163 Primary Assembly 6 Chromosome all ungapped-length 35422149 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 35507163 Primary Assembly 6 Chromosome all spanned-gaps 187 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 35507163 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 35422149 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 35507163 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 187 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 28879643 Primary Assembly 7 Chromosome all ungapped-length 28847798 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 28879643 Primary Assembly 7 Chromosome all spanned-gaps 71 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 28879643 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 28847798 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 28879643 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 71 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 44625605 Primary Assembly 8 Chromosome all ungapped-length 44525453 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 44625605 Primary Assembly 8 Chromosome all spanned-gaps 222 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 44625605 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 44525453 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 44625605 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 222 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 40602636 Primary Assembly 9 Chromosome all ungapped-length 40512413 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 40602636 Primary Assembly 9 Chromosome all spanned-gaps 199 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 40602636 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 40512413 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 40602636 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 199 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 42877533 Primary Assembly 10 Chromosome all ungapped-length 42780805 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 42877533 Primary Assembly 10 Chromosome all spanned-gaps 225 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 42877533 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 42780805 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 42877533 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 225 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 41836577 Primary Assembly 11 Chromosome all ungapped-length 41684684 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 41836577 Primary Assembly 11 Chromosome all spanned-gaps 309 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule total-length 41836577 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 41684684 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 41836577 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 309 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0