# Assembly Statistics Report # Assembly name: Plantago_major_Chr # Organism name: Plantago major (common plantain) # Isolate: PM-20190226 # Taxid: 29818 # BioSample: SAMN20255407 # BioProject: PRJNA747114 # Submitter: South China Botanical Garden, Chinese Academy of Sciences # Date: 2022-12-02 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAIFAC01 # Assembly method: NextDenovo v. 2.4.0 # Expected final version: yes # Genome coverage: 180.0x # Sequencing technology: Oxford Nanopore PromethION # RefSeq category: Representative Genome # GenBank assembly accession: GCA_026545765.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_026546605.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 671064317 all all all all spanned-gaps 397 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 494 all all all all scaffold-N50 93210706 all all all all scaffold-L50 4 all all all all scaffold-N75 91724435 all all all all scaffold-N90 299918 all all all all contig-count 891 all all all all contig-N50 8715545 all all all all contig-L50 22 all all all all total-gap-length 112401 all all all all molecule-count 6 all all all all top-level-count 494 all all all all component-count 494 all all all all gc-perc 38 Primary Assembly all all all total-length 671064317 Primary Assembly all all all ungapped-length 670951916 Primary Assembly all all all scaffold-count 494 Primary Assembly all all all scaffold-N50 93210706 Primary Assembly all all all spanned-gaps 397 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 38 Primary Assembly all all assembled-molecule total-length 592229000 Primary Assembly all all assembled-molecule ungapped-length 592203472 Primary Assembly all all assembled-molecule scaffold-count 6 Primary Assembly all all assembled-molecule scaffold-N50 106125141 Primary Assembly all all assembled-molecule spanned-gaps 204 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 38 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 78835317 Primary Assembly na na unplaced-scaffold ungapped-length 78748444 Primary Assembly na na unplaced-scaffold scaffold-count 488 Primary Assembly na na unplaced-scaffold scaffold-N50 155959 Primary Assembly na na unplaced-scaffold spanned-gaps 193 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 37.5 Primary Assembly 1 Chromosome all total-length 113784451 Primary Assembly 1 Chromosome all ungapped-length 113778557 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 113784451 Primary Assembly 1 Chromosome all spanned-gaps 44 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 38 Primary Assembly 1 Chromosome assembled-molecule total-length 113784451 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 113778557 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 113784451 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 44 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 38 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 112697239 Primary Assembly 2 Chromosome all ungapped-length 112693374 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 112697239 Primary Assembly 2 Chromosome all spanned-gaps 33 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 38 Primary Assembly 2 Chromosome assembled-molecule total-length 112697239 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 112693374 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 112697239 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 33 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 38 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 106125141 Primary Assembly 3 Chromosome all ungapped-length 106120627 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 106125141 Primary Assembly 3 Chromosome all spanned-gaps 38 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 38 Primary Assembly 3 Chromosome assembled-molecule total-length 106125141 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 106120627 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 106125141 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 38 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 38 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 93210706 Primary Assembly 4 Chromosome all ungapped-length 93206271 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 93210706 Primary Assembly 4 Chromosome all spanned-gaps 28 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 38 Primary Assembly 4 Chromosome assembled-molecule total-length 93210706 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 93206271 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 93210706 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 28 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 38 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 91724435 Primary Assembly 5 Chromosome all ungapped-length 91720607 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 91724435 Primary Assembly 5 Chromosome all spanned-gaps 36 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 38 Primary Assembly 5 Chromosome assembled-molecule total-length 91724435 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 91720607 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 91724435 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 36 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 38 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 74687028 Primary Assembly 6 Chromosome all ungapped-length 74684036 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 74687028 Primary Assembly 6 Chromosome all spanned-gaps 25 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 38 Primary Assembly 6 Chromosome assembled-molecule total-length 74687028 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 74684036 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 74687028 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 25 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 38 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0