# Assembly Statistics Report # Assembly name: PisVer_v2 # Organism name: Pistacia vera (pistachio) # Infraspecific name: cultivar=Batoury # Taxid: 55513 # BioSample: SAMN11269074 # BioProject: PRJNA526975 # Submitter: Chinese Academy of Sciences # Date: 2019-09-23 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: VTWI01 # Assembly method: PBJelly v. 15.8.24 # Expected final version: yes # Genome coverage: 374x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_008641045.1 # RefSeq assembly accession: GCF_008641045.1 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_008641385.1 GCF_008641385.1 Primary Assembly ## GCA_008641405.1 GCF_009150705.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 671280010 all all all all spanned-gaps 462 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all contig-count 2327 all all all all contig-N50 714252 all all all all contig-L50 282 all all all all total-gap-length 1059236 all all all all molecule-count 1 all all all all top-level-count 1865 all all all all component-count 1865 Primary Assembly all all all total-length 671119336 Primary Assembly all all all ungapped-length 670060100 Primary Assembly all all all spanned-gaps 462 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 671119336 Primary Assembly na na unplaced-scaffold ungapped-length 670060100 Primary Assembly na na unplaced-scaffold spanned-gaps 462 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 non-nuclear all all all total-length 160674 non-nuclear all all all ungapped-length 160674 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all assembled-molecule total-length 160674 non-nuclear all all assembled-molecule ungapped-length 160674 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Plastid all total-length 160674 non-nuclear Pltd Plastid all ungapped-length 160674 non-nuclear Pltd Plastid all spanned-gaps 0 non-nuclear Pltd Plastid all unspanned-gaps 0 non-nuclear Pltd Plastid assembled-molecule total-length 160674 non-nuclear Pltd Plastid assembled-molecule ungapped-length 160674 non-nuclear Pltd Plastid assembled-molecule spanned-gaps 0 non-nuclear Pltd Plastid assembled-molecule unspanned-gaps 0 non-nuclear Pltd Plastid unlocalized-scaffold total-length 0 non-nuclear Pltd Plastid unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Plastid unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Plastid unlocalized-scaffold unspanned-gaps 0