# Assembly Statistics Report # Assembly name: PHallii_v3.1 # Organism name: Panicum hallii (monocots) # Infraspecific name: strain=FIL2 # Taxid: 206008 # BioSample: SAMN03003198 # BioProject: PRJNA250527 # Submitter: DOE Joint Genome Institute # Date: 2018-05-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NCQW02 # Assembly method: MECAT v. 33 # Genome coverage: 202x # Sequencing technology: PACBIO SEQUEL; Illumina HISeq; MOLECULO # RefSeq category: Representative Genome # GenBank assembly accession: GCA_002211085.2 # RefSeq assembly accession: GCF_002211085.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_002211095.2 GCF_002211095.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 535889049 all all all all spanned-gaps 0 all all all all unspanned-gaps 736 all all all all region-count 0 all all all all scaffold-count 1027 all all all all scaffold-N50 1111465 all all all all scaffold-L50 117 all all all all scaffold-N75 475828 all all all all scaffold-N90 228759 all all all all contig-count 1027 all all all all contig-N50 1111465 all all all all contig-L50 117 all all all all total-gap-length 7360000 all all all all molecule-count 9 all all all all top-level-count 291 all all all all component-count 1027 Primary Assembly all all all total-length 535889049 Primary Assembly all all all ungapped-length 528529049 Primary Assembly all all all scaffold-count 1027 Primary Assembly all all all scaffold-N50 1111465 Primary Assembly all all all spanned-gaps 0 Primary Assembly all all all unspanned-gaps 736 Primary Assembly all all assembled-molecule total-length 507413504 Primary Assembly all all assembled-molecule ungapped-length 500053504 Primary Assembly all all assembled-molecule scaffold-count 745 Primary Assembly all all assembled-molecule scaffold-N50 1175550 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 736 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 28475545 Primary Assembly na na unplaced-scaffold ungapped-length 28475545 Primary Assembly na na unplaced-scaffold scaffold-count 282 Primary Assembly na na unplaced-scaffold scaffold-N50 130793 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 59908720 Primary Assembly 1 Chromosome all ungapped-length 59018720 Primary Assembly 1 Chromosome all scaffold-count 90 Primary Assembly 1 Chromosome all scaffold-N50 1157335 Primary Assembly 1 Chromosome all spanned-gaps 0 Primary Assembly 1 Chromosome all unspanned-gaps 89 Primary Assembly 1 Chromosome assembled-molecule total-length 59908720 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 59018720 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 90 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 1157335 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 89 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 57869027 Primary Assembly 2 Chromosome all ungapped-length 57149027 Primary Assembly 2 Chromosome all scaffold-count 73 Primary Assembly 2 Chromosome all scaffold-N50 1624789 Primary Assembly 2 Chromosome all spanned-gaps 0 Primary Assembly 2 Chromosome all unspanned-gaps 72 Primary Assembly 2 Chromosome assembled-molecule total-length 57869027 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 57149027 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 73 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 1624789 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 72 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 64542667 Primary Assembly 3 Chromosome all ungapped-length 63582667 Primary Assembly 3 Chromosome all scaffold-count 97 Primary Assembly 3 Chromosome all scaffold-N50 1810537 Primary Assembly 3 Chromosome all spanned-gaps 0 Primary Assembly 3 Chromosome all unspanned-gaps 96 Primary Assembly 3 Chromosome assembled-molecule total-length 64542667 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 63582667 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 97 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 1810537 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 96 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 52913018 Primary Assembly 4 Chromosome all ungapped-length 51893018 Primary Assembly 4 Chromosome all scaffold-count 103 Primary Assembly 4 Chromosome all scaffold-N50 677479 Primary Assembly 4 Chromosome all spanned-gaps 0 Primary Assembly 4 Chromosome all unspanned-gaps 102 Primary Assembly 4 Chromosome assembled-molecule total-length 52913018 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 51893018 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 103 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 677479 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 102 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 59521222 Primary Assembly 5 Chromosome all ungapped-length 58811222 Primary Assembly 5 Chromosome all scaffold-count 72 Primary Assembly 5 Chromosome all scaffold-N50 1862923 Primary Assembly 5 Chromosome all spanned-gaps 0 Primary Assembly 5 Chromosome all unspanned-gaps 71 Primary Assembly 5 Chromosome assembled-molecule total-length 59521222 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 58811222 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 72 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 1862923 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 71 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 45727423 Primary Assembly 6 Chromosome all ungapped-length 44837423 Primary Assembly 6 Chromosome all scaffold-count 90 Primary Assembly 6 Chromosome all scaffold-N50 705151 Primary Assembly 6 Chromosome all spanned-gaps 0 Primary Assembly 6 Chromosome all unspanned-gaps 89 Primary Assembly 6 Chromosome assembled-molecule total-length 45727423 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 44837423 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 90 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 705151 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 89 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 48048951 Primary Assembly 7 Chromosome all ungapped-length 47478951 Primary Assembly 7 Chromosome all scaffold-count 58 Primary Assembly 7 Chromosome all scaffold-N50 1444301 Primary Assembly 7 Chromosome all spanned-gaps 0 Primary Assembly 7 Chromosome all unspanned-gaps 57 Primary Assembly 7 Chromosome assembled-molecule total-length 48048951 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 47478951 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 58 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 1444301 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 57 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 44948983 Primary Assembly 8 Chromosome all ungapped-length 44178983 Primary Assembly 8 Chromosome all scaffold-count 78 Primary Assembly 8 Chromosome all scaffold-N50 908640 Primary Assembly 8 Chromosome all spanned-gaps 0 Primary Assembly 8 Chromosome all unspanned-gaps 77 Primary Assembly 8 Chromosome assembled-molecule total-length 44948983 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 44178983 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 78 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 908640 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 77 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 73933493 Primary Assembly 9 Chromosome all ungapped-length 73103493 Primary Assembly 9 Chromosome all scaffold-count 84 Primary Assembly 9 Chromosome all scaffold-N50 1448913 Primary Assembly 9 Chromosome all spanned-gaps 0 Primary Assembly 9 Chromosome all unspanned-gaps 83 Primary Assembly 9 Chromosome assembled-molecule total-length 73933493 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 73103493 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 84 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 1448913 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 83 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0