# Assembly Statistics Report # Assembly name: ObraRS2 # Organism name: Oryza brachyantha (malo sina) # Taxid: 4533 # BioSample: SAMN02981362 # BioProject: PRJNA70533 # Submitter: The Institute of Genetics and Developmental Biology # Date: 2021-03-10 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AGAT02 # Assembly method: MECAT v. 1.3; CANU v. 1.5 # Expected final version: no # Genome coverage: 150.0x # Sequencing technology: PacBio # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000231095.3 # RefSeq assembly accession: GCF_000231095.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000231105.3 GCF_000231105.2 Primary Assembly ## GCF_017612185.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 263329681 all all all all spanned-gaps 0 all all all all unspanned-gaps 14 all all all all region-count 0 all all all all scaffold-count 74 all all all all scaffold-N50 11392507 all all all all scaffold-L50 9 all all all all scaffold-N75 8415777 all all all all scaffold-N90 6159934 all all all all contig-count 74 all all all all contig-N50 11392507 all all all all contig-L50 9 all all all all total-gap-length 1400 all all all all molecule-count 13 all all all all top-level-count 60 all all all all component-count 74 Primary Assembly all all all total-length 263195077 Primary Assembly all all all ungapped-length 263193677 Primary Assembly all all all scaffold-count 73 Primary Assembly all all all scaffold-N50 11392507 Primary Assembly all all all spanned-gaps 0 Primary Assembly all all all unspanned-gaps 14 Primary Assembly all all assembled-molecule total-length 258903951 Primary Assembly all all assembled-molecule ungapped-length 258902551 Primary Assembly all all assembled-molecule scaffold-count 26 Primary Assembly all all assembled-molecule scaffold-N50 11392507 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 14 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 4291126 Primary Assembly na na unplaced-scaffold ungapped-length 4291126 Primary Assembly na na unplaced-scaffold scaffold-count 47 Primary Assembly na na unplaced-scaffold scaffold-N50 120491 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 33554891 Primary Assembly 1 Chromosome all ungapped-length 33554791 Primary Assembly 1 Chromosome all scaffold-count 2 Primary Assembly 1 Chromosome all scaffold-N50 21088367 Primary Assembly 1 Chromosome all spanned-gaps 0 Primary Assembly 1 Chromosome all unspanned-gaps 1 Primary Assembly 1 Chromosome assembled-molecule total-length 33554891 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 33554791 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 21088367 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 27476678 Primary Assembly 2 Chromosome all ungapped-length 27476578 Primary Assembly 2 Chromosome all scaffold-count 2 Primary Assembly 2 Chromosome all scaffold-N50 17226648 Primary Assembly 2 Chromosome all spanned-gaps 0 Primary Assembly 2 Chromosome all unspanned-gaps 1 Primary Assembly 2 Chromosome assembled-molecule total-length 27476678 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 27476578 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 17226648 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 29856040 Primary Assembly 3 Chromosome all ungapped-length 29855940 Primary Assembly 3 Chromosome all scaffold-count 2 Primary Assembly 3 Chromosome all scaffold-N50 16107089 Primary Assembly 3 Chromosome all spanned-gaps 0 Primary Assembly 3 Chromosome all unspanned-gaps 1 Primary Assembly 3 Chromosome assembled-molecule total-length 29856040 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 29855940 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 16107089 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 21827379 Primary Assembly 4 Chromosome all ungapped-length 21827279 Primary Assembly 4 Chromosome all scaffold-count 2 Primary Assembly 4 Chromosome all scaffold-N50 16782315 Primary Assembly 4 Chromosome all spanned-gaps 0 Primary Assembly 4 Chromosome all unspanned-gaps 1 Primary Assembly 4 Chromosome assembled-molecule total-length 21827379 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 21827279 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 16782315 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 20245399 Primary Assembly 5 Chromosome all ungapped-length 20245299 Primary Assembly 5 Chromosome all scaffold-count 2 Primary Assembly 5 Chromosome all scaffold-N50 12510418 Primary Assembly 5 Chromosome all spanned-gaps 0 Primary Assembly 5 Chromosome all unspanned-gaps 1 Primary Assembly 5 Chromosome assembled-molecule total-length 20245399 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 20245299 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 12510418 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 21974636 Primary Assembly 6 Chromosome all ungapped-length 21974536 Primary Assembly 6 Chromosome all scaffold-count 2 Primary Assembly 6 Chromosome all scaffold-N50 11392507 Primary Assembly 6 Chromosome all spanned-gaps 0 Primary Assembly 6 Chromosome all unspanned-gaps 1 Primary Assembly 6 Chromosome assembled-molecule total-length 21974636 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 21974536 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 11392507 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 19450094 Primary Assembly 7 Chromosome all ungapped-length 19449994 Primary Assembly 7 Chromosome all scaffold-count 2 Primary Assembly 7 Chromosome all scaffold-N50 12057407 Primary Assembly 7 Chromosome all spanned-gaps 0 Primary Assembly 7 Chromosome all unspanned-gaps 1 Primary Assembly 7 Chromosome assembled-molecule total-length 19450094 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 19449994 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 12057407 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 18299912 Primary Assembly 8 Chromosome all ungapped-length 18299812 Primary Assembly 8 Chromosome all scaffold-count 2 Primary Assembly 8 Chromosome all scaffold-N50 10067547 Primary Assembly 8 Chromosome all spanned-gaps 0 Primary Assembly 8 Chromosome all unspanned-gaps 1 Primary Assembly 8 Chromosome assembled-molecule total-length 18299912 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 18299812 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 10067547 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 15506556 Primary Assembly 9 Chromosome all ungapped-length 15506356 Primary Assembly 9 Chromosome all scaffold-count 3 Primary Assembly 9 Chromosome all scaffold-N50 11241863 Primary Assembly 9 Chromosome all spanned-gaps 0 Primary Assembly 9 Chromosome all unspanned-gaps 2 Primary Assembly 9 Chromosome assembled-molecule total-length 15506556 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 15506356 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 3 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 11241863 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 2 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 16246320 Primary Assembly 10 Chromosome all ungapped-length 16246120 Primary Assembly 10 Chromosome all scaffold-count 3 Primary Assembly 10 Chromosome all scaffold-N50 5930716 Primary Assembly 10 Chromosome all spanned-gaps 0 Primary Assembly 10 Chromosome all unspanned-gaps 2 Primary Assembly 10 Chromosome assembled-molecule total-length 16246320 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 16246120 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 3 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 5930716 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 2 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 17534090 Primary Assembly 11 Chromosome all ungapped-length 17533990 Primary Assembly 11 Chromosome all scaffold-count 2 Primary Assembly 11 Chromosome all scaffold-N50 9644452 Primary Assembly 11 Chromosome all spanned-gaps 0 Primary Assembly 11 Chromosome all unspanned-gaps 1 Primary Assembly 11 Chromosome assembled-molecule total-length 17534090 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 17533990 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 9644452 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 16931956 Primary Assembly 12 Chromosome all ungapped-length 16931856 Primary Assembly 12 Chromosome all scaffold-count 2 Primary Assembly 12 Chromosome all scaffold-N50 8516079 Primary Assembly 12 Chromosome all spanned-gaps 0 Primary Assembly 12 Chromosome all unspanned-gaps 1 Primary Assembly 12 Chromosome assembled-molecule total-length 16931956 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 16931856 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 2 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 8516079 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 1 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0 non-nuclear all all all total-length 134604 non-nuclear all all all ungapped-length 134604 non-nuclear all all all scaffold-count 1 non-nuclear all all all scaffold-N50 134604 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all assembled-molecule total-length 134604 non-nuclear all all assembled-molecule ungapped-length 134604 non-nuclear all all assembled-molecule scaffold-count 1 non-nuclear all all assembled-molecule scaffold-N50 134604 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold scaffold-count 0 non-nuclear all all unlocalized-scaffold scaffold-N50 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 134604 non-nuclear Pltd Chloroplast all ungapped-length 134604 non-nuclear Pltd Chloroplast all scaffold-count 1 non-nuclear Pltd Chloroplast all scaffold-N50 134604 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule total-length 134604 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 134604 non-nuclear Pltd Chloroplast assembled-molecule scaffold-count 1 non-nuclear Pltd Chloroplast assembled-molecule scaffold-N50 134604 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-count 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-N50 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0