# Assembly Statistics Report # Assembly name: ASM982973v1 # Organism name: Neopyropia yezoensis (susabi-nori) # Infraspecific name: cultivar=RZ # Taxid: 2788 # BioSample: SAMN13316713 # BioProject: PRJNA589917 # Submitter: Ocean University # Date: 2020-01-06 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WMLA01 # Assembly method: HGAP v. RS_HGAP_Assembly.3; PBJelly2 v. 2017-12-21; 3d-dna pipeline v. 2018-03-09; SSPACE v. 2017-12-21; FinisherSC v. 2017-12-21 # Expected final version: yes # Genome coverage: 100.0x # Sequencing technology: Illumina HiSeq; PacBio RS; Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009829735.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009829785.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 107590730 all all all all spanned-gaps 971 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 28 all all all all scaffold-N50 34332347 all all all all scaffold-L50 2 all all all all scaffold-N75 29394270 all all all all scaffold-N90 29394270 all all all all contig-count 999 all all all all contig-N50 202496 all all all all contig-L50 160 all all all all total-gap-length 501566 all all all all molecule-count 3 all all all all top-level-count 28 all all all all component-count 28 Primary Assembly all all all total-length 107590730 Primary Assembly all all all ungapped-length 107089164 Primary Assembly all all all scaffold-count 28 Primary Assembly all all all scaffold-N50 34332347 Primary Assembly all all all spanned-gaps 971 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 107318753 Primary Assembly all all assembled-molecule ungapped-length 106817187 Primary Assembly all all assembled-molecule scaffold-count 3 Primary Assembly all all assembled-molecule scaffold-N50 34332347 Primary Assembly all all assembled-molecule spanned-gaps 971 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 271977 Primary Assembly na na unplaced-scaffold ungapped-length 271977 Primary Assembly na na unplaced-scaffold scaffold-count 25 Primary Assembly na na unplaced-scaffold scaffold-N50 16872 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 43592136 Primary Assembly 1 Chromosome all ungapped-length 43377214 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 43592136 Primary Assembly 1 Chromosome all spanned-gaps 440 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 43592136 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 43377214 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 43592136 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 440 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 34332347 Primary Assembly 2 Chromosome all ungapped-length 34166016 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 34332347 Primary Assembly 2 Chromosome all spanned-gaps 281 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 34332347 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 34166016 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 34332347 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 281 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 29394270 Primary Assembly 3 Chromosome all ungapped-length 29273957 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 29394270 Primary Assembly 3 Chromosome all spanned-gaps 250 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 29394270 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 29273957 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 29394270 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 250 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0