# Assembly Statistics Report # Assembly name: ASM2008022v1 # Organism name: Gynochthodes officinalis (ba ji) # Isolate: JW2020 # Taxid: 266091 # BioSample: SAMN14599083 # BioProject: PRJNA625354 # Submitter: Crops Research Institute, Guangdong Academy of Agricultural Sciences # Date: 2021-09-24 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAIQDA01 # Assembly method: NextDenovo v. 2.0-beta.1 # Expected final version: no # Genome coverage: 119.85x # Sequencing technology: Oxford Nanopore PromethION; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020080225.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020080235.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 484869040 all all all all spanned-gaps 173 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 64 all all all all scaffold-N50 40972926 all all all all scaffold-L50 6 all all all all scaffold-N75 36946065 all all all all scaffold-N90 33060658 all all all all contig-count 237 all all all all contig-N50 3605146 all all all all contig-L50 36 all all all all total-gap-length 17300 all all all all molecule-count 11 all all all all top-level-count 64 all all all all component-count 64 Primary Assembly all all all total-length 484869040 Primary Assembly all all all ungapped-length 484851740 Primary Assembly all all all scaffold-count 64 Primary Assembly all all all scaffold-N50 40972926 Primary Assembly all all all spanned-gaps 173 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 440084418 Primary Assembly all all assembled-molecule ungapped-length 440067118 Primary Assembly all all assembled-molecule scaffold-count 11 Primary Assembly all all assembled-molecule scaffold-N50 40972926 Primary Assembly all all assembled-molecule spanned-gaps 173 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 44784622 Primary Assembly na na unplaced-scaffold ungapped-length 44784622 Primary Assembly na na unplaced-scaffold scaffold-count 53 Primary Assembly na na unplaced-scaffold scaffold-N50 1570125 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly LG01 Linkage Group all total-length 46998976 Primary Assembly LG01 Linkage Group all ungapped-length 46997276 Primary Assembly LG01 Linkage Group all scaffold-count 1 Primary Assembly LG01 Linkage Group all scaffold-N50 46998976 Primary Assembly LG01 Linkage Group all spanned-gaps 17 Primary Assembly LG01 Linkage Group all unspanned-gaps 0 Primary Assembly LG01 Linkage Group assembled-molecule total-length 46998976 Primary Assembly LG01 Linkage Group assembled-molecule ungapped-length 46997276 Primary Assembly LG01 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG01 Linkage Group assembled-molecule scaffold-N50 46998976 Primary Assembly LG01 Linkage Group assembled-molecule spanned-gaps 17 Primary Assembly LG01 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG02 Linkage Group all total-length 43901840 Primary Assembly LG02 Linkage Group all ungapped-length 43900140 Primary Assembly LG02 Linkage Group all scaffold-count 1 Primary Assembly LG02 Linkage Group all scaffold-N50 43901840 Primary Assembly LG02 Linkage Group all spanned-gaps 17 Primary Assembly LG02 Linkage Group all unspanned-gaps 0 Primary Assembly LG02 Linkage Group assembled-molecule total-length 43901840 Primary Assembly LG02 Linkage Group assembled-molecule ungapped-length 43900140 Primary Assembly LG02 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG02 Linkage Group assembled-molecule scaffold-N50 43901840 Primary Assembly LG02 Linkage Group assembled-molecule spanned-gaps 17 Primary Assembly LG02 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG03 Linkage Group all total-length 43568606 Primary Assembly LG03 Linkage Group all ungapped-length 43567206 Primary Assembly LG03 Linkage Group all scaffold-count 1 Primary Assembly LG03 Linkage Group all scaffold-N50 43568606 Primary Assembly LG03 Linkage Group all spanned-gaps 14 Primary Assembly LG03 Linkage Group all unspanned-gaps 0 Primary Assembly LG03 Linkage Group assembled-molecule total-length 43568606 Primary Assembly LG03 Linkage Group assembled-molecule ungapped-length 43567206 Primary Assembly LG03 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG03 Linkage Group assembled-molecule scaffold-N50 43568606 Primary Assembly LG03 Linkage Group assembled-molecule spanned-gaps 14 Primary Assembly LG03 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG04 Linkage Group all total-length 43532616 Primary Assembly LG04 Linkage Group all ungapped-length 43530116 Primary Assembly LG04 Linkage Group all scaffold-count 1 Primary Assembly LG04 Linkage Group all scaffold-N50 43532616 Primary Assembly LG04 Linkage Group all spanned-gaps 25 Primary Assembly LG04 Linkage Group all unspanned-gaps 0 Primary Assembly LG04 Linkage Group assembled-molecule total-length 43532616 Primary Assembly LG04 Linkage Group assembled-molecule ungapped-length 43530116 Primary Assembly LG04 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG04 Linkage Group assembled-molecule scaffold-N50 43532616 Primary Assembly LG04 Linkage Group assembled-molecule spanned-gaps 25 Primary Assembly LG04 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG05 Linkage Group all total-length 41262427 Primary Assembly LG05 Linkage Group all ungapped-length 41260027 Primary Assembly LG05 Linkage Group all scaffold-count 1 Primary Assembly LG05 Linkage Group all scaffold-N50 41262427 Primary Assembly LG05 Linkage Group all spanned-gaps 24 Primary Assembly LG05 Linkage Group all unspanned-gaps 0 Primary Assembly LG05 Linkage Group assembled-molecule total-length 41262427 Primary Assembly LG05 Linkage Group assembled-molecule ungapped-length 41260027 Primary Assembly LG05 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG05 Linkage Group assembled-molecule scaffold-N50 41262427 Primary Assembly LG05 Linkage Group assembled-molecule spanned-gaps 24 Primary Assembly LG05 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG06 Linkage Group all total-length 40972926 Primary Assembly LG06 Linkage Group all ungapped-length 40971326 Primary Assembly LG06 Linkage Group all scaffold-count 1 Primary Assembly LG06 Linkage Group all scaffold-N50 40972926 Primary Assembly LG06 Linkage Group all spanned-gaps 16 Primary Assembly LG06 Linkage Group all unspanned-gaps 0 Primary Assembly LG06 Linkage Group assembled-molecule total-length 40972926 Primary Assembly LG06 Linkage Group assembled-molecule ungapped-length 40971326 Primary Assembly LG06 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG06 Linkage Group assembled-molecule scaffold-N50 40972926 Primary Assembly LG06 Linkage Group assembled-molecule spanned-gaps 16 Primary Assembly LG06 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG07 Linkage Group all total-length 37855901 Primary Assembly LG07 Linkage Group all ungapped-length 37854801 Primary Assembly LG07 Linkage Group all scaffold-count 1 Primary Assembly LG07 Linkage Group all scaffold-N50 37855901 Primary Assembly LG07 Linkage Group all spanned-gaps 11 Primary Assembly LG07 Linkage Group all unspanned-gaps 0 Primary Assembly LG07 Linkage Group assembled-molecule total-length 37855901 Primary Assembly LG07 Linkage Group assembled-molecule ungapped-length 37854801 Primary Assembly LG07 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG07 Linkage Group assembled-molecule scaffold-N50 37855901 Primary Assembly LG07 Linkage Group assembled-molecule spanned-gaps 11 Primary Assembly LG07 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG08 Linkage Group all total-length 37275217 Primary Assembly LG08 Linkage Group all ungapped-length 37273717 Primary Assembly LG08 Linkage Group all scaffold-count 1 Primary Assembly LG08 Linkage Group all scaffold-N50 37275217 Primary Assembly LG08 Linkage Group all spanned-gaps 15 Primary Assembly LG08 Linkage Group all unspanned-gaps 0 Primary Assembly LG08 Linkage Group assembled-molecule total-length 37275217 Primary Assembly LG08 Linkage Group assembled-molecule ungapped-length 37273717 Primary Assembly LG08 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG08 Linkage Group assembled-molecule scaffold-N50 37275217 Primary Assembly LG08 Linkage Group assembled-molecule spanned-gaps 15 Primary Assembly LG08 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG08 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG09 Linkage Group all total-length 36946065 Primary Assembly LG09 Linkage Group all ungapped-length 36944565 Primary Assembly LG09 Linkage Group all scaffold-count 1 Primary Assembly LG09 Linkage Group all scaffold-N50 36946065 Primary Assembly LG09 Linkage Group all spanned-gaps 15 Primary Assembly LG09 Linkage Group all unspanned-gaps 0 Primary Assembly LG09 Linkage Group assembled-molecule total-length 36946065 Primary Assembly LG09 Linkage Group assembled-molecule ungapped-length 36944565 Primary Assembly LG09 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG09 Linkage Group assembled-molecule scaffold-N50 36946065 Primary Assembly LG09 Linkage Group assembled-molecule spanned-gaps 15 Primary Assembly LG09 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG09 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG10 Linkage Group all total-length 34709186 Primary Assembly LG10 Linkage Group all ungapped-length 34708086 Primary Assembly LG10 Linkage Group all scaffold-count 1 Primary Assembly LG10 Linkage Group all scaffold-N50 34709186 Primary Assembly LG10 Linkage Group all spanned-gaps 11 Primary Assembly LG10 Linkage Group all unspanned-gaps 0 Primary Assembly LG10 Linkage Group assembled-molecule total-length 34709186 Primary Assembly LG10 Linkage Group assembled-molecule ungapped-length 34708086 Primary Assembly LG10 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG10 Linkage Group assembled-molecule scaffold-N50 34709186 Primary Assembly LG10 Linkage Group assembled-molecule spanned-gaps 11 Primary Assembly LG10 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG11 Linkage Group all total-length 33060658 Primary Assembly LG11 Linkage Group all ungapped-length 33059858 Primary Assembly LG11 Linkage Group all scaffold-count 1 Primary Assembly LG11 Linkage Group all scaffold-N50 33060658 Primary Assembly LG11 Linkage Group all spanned-gaps 8 Primary Assembly LG11 Linkage Group all unspanned-gaps 0 Primary Assembly LG11 Linkage Group assembled-molecule total-length 33060658 Primary Assembly LG11 Linkage Group assembled-molecule ungapped-length 33059858 Primary Assembly LG11 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG11 Linkage Group assembled-molecule scaffold-N50 33060658 Primary Assembly LG11 Linkage Group assembled-molecule spanned-gaps 8 Primary Assembly LG11 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold unspanned-gaps 0