# Assembly Statistics Report # Assembly name: Mcan_v2 # Organism name: Melastoma candidum (eudicots) # Isolate: YZ-2022 # Taxid: 119954 # BioSample: SAMN26317941 # BioProject: PRJNA811312 # Submitter: Sun Yat-sen University # Date: 2022-06-07 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAKZET01 # Assembly method: Canu v. 2.0 # Expected final version: yes # Genome coverage: 238.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023653495.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023653505.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 256218469 all all all all spanned-gaps 423 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 266 all all all all scaffold-N50 20460156 all all all all scaffold-L50 5 all all all all scaffold-N75 20127000 all all all all scaffold-N90 13725599 all all all all contig-count 689 all all all all contig-N50 1536266 all all all all contig-L50 55 all all all all total-gap-length 170478 all all all all molecule-count 12 all all all all top-level-count 266 all all all all component-count 266 all all all all gc-perc 43 Primary Assembly all all all total-length 256218469 Primary Assembly all all all ungapped-length 256047991 Primary Assembly all all all scaffold-count 266 Primary Assembly all all all scaffold-N50 20460156 Primary Assembly all all all spanned-gaps 423 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 43 Primary Assembly all all assembled-molecule total-length 251208690 Primary Assembly all all assembled-molecule ungapped-length 251039126 Primary Assembly all all assembled-molecule scaffold-count 12 Primary Assembly all all assembled-molecule scaffold-N50 20460156 Primary Assembly all all assembled-molecule spanned-gaps 404 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 43 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 5009779 Primary Assembly na na unplaced-scaffold ungapped-length 5008865 Primary Assembly na na unplaced-scaffold scaffold-count 254 Primary Assembly na na unplaced-scaffold scaffold-N50 27385 Primary Assembly na na unplaced-scaffold spanned-gaps 19 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 42.5 Primary Assembly 1 Chromosome all total-length 12541575 Primary Assembly 1 Chromosome all ungapped-length 12529937 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 12541575 Primary Assembly 1 Chromosome all spanned-gaps 29 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 43 Primary Assembly 1 Chromosome assembled-molecule total-length 12541575 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 12529937 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 12541575 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 29 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 43 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 20211832 Primary Assembly 2 Chromosome all ungapped-length 20195671 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 20211832 Primary Assembly 2 Chromosome all spanned-gaps 39 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 43 Primary Assembly 2 Chromosome assembled-molecule total-length 20211832 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 20195671 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 20211832 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 39 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 43 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 25992530 Primary Assembly 3 Chromosome all ungapped-length 25974346 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 25992530 Primary Assembly 3 Chromosome all spanned-gaps 44 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 43 Primary Assembly 3 Chromosome assembled-molecule total-length 25992530 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 25974346 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 25992530 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 44 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 43 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 33924140 Primary Assembly 4 Chromosome all ungapped-length 33906387 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 33924140 Primary Assembly 4 Chromosome all spanned-gaps 46 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 43 Primary Assembly 4 Chromosome assembled-molecule total-length 33924140 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 33906387 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 33924140 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 46 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 43 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 20127000 Primary Assembly 5 Chromosome all ungapped-length 20112931 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 20127000 Primary Assembly 5 Chromosome all spanned-gaps 31 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 43 Primary Assembly 5 Chromosome assembled-molecule total-length 20127000 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 20112931 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 20127000 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 31 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 43 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 20460156 Primary Assembly 6 Chromosome all ungapped-length 20453156 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 20460156 Primary Assembly 6 Chromosome all spanned-gaps 14 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 43 Primary Assembly 6 Chromosome assembled-molecule total-length 20460156 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 20453156 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 20460156 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 14 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 43 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 24490725 Primary Assembly 7 Chromosome all ungapped-length 24474610 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 24490725 Primary Assembly 7 Chromosome all spanned-gaps 37 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 43 Primary Assembly 7 Chromosome assembled-molecule total-length 24490725 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 24474610 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 24490725 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 37 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 43 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 13725599 Primary Assembly 8 Chromosome all ungapped-length 13717007 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 13725599 Primary Assembly 8 Chromosome all spanned-gaps 21 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 43 Primary Assembly 8 Chromosome assembled-molecule total-length 13725599 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 13717007 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 13725599 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 21 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 43 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 14357301 Primary Assembly 9 Chromosome all ungapped-length 14346709 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 14357301 Primary Assembly 9 Chromosome all spanned-gaps 25 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 43 Primary Assembly 9 Chromosome assembled-molecule total-length 14357301 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 14346709 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 14357301 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 25 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 43 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 20156260 Primary Assembly 10 Chromosome all ungapped-length 20140145 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 20156260 Primary Assembly 10 Chromosome all spanned-gaps 37 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome all gc-perc 43 Primary Assembly 10 Chromosome assembled-molecule total-length 20156260 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 20140145 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 20156260 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 37 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule gc-perc 43 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 29221783 Primary Assembly 11 Chromosome all ungapped-length 29199507 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 29221783 Primary Assembly 11 Chromosome all spanned-gaps 56 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome all gc-perc 42 Primary Assembly 11 Chromosome assembled-molecule total-length 29221783 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 29199507 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 29221783 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 56 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule gc-perc 42 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 15999789 Primary Assembly 12 Chromosome all ungapped-length 15988720 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 15999789 Primary Assembly 12 Chromosome all spanned-gaps 25 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome all gc-perc 43 Primary Assembly 12 Chromosome assembled-molecule total-length 15999789 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 15988720 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 15999789 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 25 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule gc-perc 43 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0