# Assembly Statistics Report # Assembly name: SCU_Esa_1.0 # Organism name: Eutrema salsugineum (saltwater cress) # Infraspecific name: ecotype=Shandong # Isolate: Shandong2018 # Taxid: 72664 # BioSample: SAMN13047836 # BioProject: PRJNA577380 # Submitter: Sichuan University # Date: 2021-01-19 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WSFQ01 # Assembly method: Canu v. 1.8 # Expected final version: yes # Genome coverage: 63.0x # Sequencing technology: Oxford Nanopore GridION # GenBank assembly accession: GCA_016617915.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016617995.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 295494356 all all all all spanned-gaps 825 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 655 all all all all scaffold-N50 36815000 all all all all scaffold-L50 4 all all all all scaffold-N75 35982332 all all all all scaffold-N90 35294615 all all all all contig-count 1480 all all all all contig-N50 3053001 all all all all contig-L50 29 all all all all total-gap-length 412026 all all all all molecule-count 7 all all all all top-level-count 655 all all all all component-count 655 all all all all gc-perc 37.5 Primary Assembly all all all total-length 295494356 Primary Assembly all all all ungapped-length 295082330 Primary Assembly all all all scaffold-count 655 Primary Assembly all all all scaffold-N50 36815000 Primary Assembly all all all spanned-gaps 825 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 37.5 Primary Assembly all all assembled-molecule total-length 266074000 Primary Assembly all all assembled-molecule ungapped-length 265768974 Primary Assembly all all assembled-molecule scaffold-count 7 Primary Assembly all all assembled-molecule scaffold-N50 36815000 Primary Assembly all all assembled-molecule spanned-gaps 611 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 37.5 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 29420356 Primary Assembly na na unplaced-scaffold ungapped-length 29313356 Primary Assembly na na unplaced-scaffold scaffold-count 648 Primary Assembly na na unplaced-scaffold scaffold-N50 51115 Primary Assembly na na unplaced-scaffold spanned-gaps 214 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 37 Primary Assembly 1 Chromosome all total-length 39421885 Primary Assembly 1 Chromosome all ungapped-length 39385885 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 39421885 Primary Assembly 1 Chromosome all spanned-gaps 72 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 37.5 Primary Assembly 1 Chromosome assembled-molecule total-length 39421885 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 39385885 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 39421885 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 72 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 35294615 Primary Assembly 2 Chromosome all ungapped-length 35249115 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 35294615 Primary Assembly 2 Chromosome all spanned-gaps 91 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 38 Primary Assembly 2 Chromosome assembled-molecule total-length 35294615 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 35249115 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 35294615 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 91 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 38 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 42208000 Primary Assembly 3 Chromosome all ungapped-length 42137000 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 42208000 Primary Assembly 3 Chromosome all spanned-gaps 142 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 38 Primary Assembly 3 Chromosome assembled-molecule total-length 42208000 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 42137000 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 42208000 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 142 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 38 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 36815000 Primary Assembly 4 Chromosome all ungapped-length 36793000 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 36815000 Primary Assembly 4 Chromosome all spanned-gaps 44 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 37.5 Primary Assembly 4 Chromosome assembled-molecule total-length 36815000 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 36793000 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 36815000 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 44 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 40302000 Primary Assembly 5 Chromosome all ungapped-length 40265000 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 40302000 Primary Assembly 5 Chromosome all spanned-gaps 74 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 38 Primary Assembly 5 Chromosome assembled-molecule total-length 40302000 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 40265000 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 40302000 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 74 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 38 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 36050168 Primary Assembly 6 Chromosome all ungapped-length 36008668 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 36050168 Primary Assembly 6 Chromosome all spanned-gaps 83 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 37.5 Primary Assembly 6 Chromosome assembled-molecule total-length 36050168 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 36008668 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 36050168 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 83 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 35982332 Primary Assembly 7 Chromosome all ungapped-length 35930306 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 35982332 Primary Assembly 7 Chromosome all spanned-gaps 105 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 37.5 Primary Assembly 7 Chromosome assembled-molecule total-length 35982332 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 35930306 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 35982332 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 105 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0