# Assembly Statistics Report # Assembly name: ASM2756393v1 # Organism name: Costus lasius (monocots) # Isolate: GH#126 # Taxid: 328769 # BioSample: SAMN30087462 # BioProject: PRJNA864861 # Submitter: University of California, Santa Cruz # Date: 2023-01-09 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JANVAS01 # Assembly method: HiFiasm v. August 2020 # Expected final version: yes # Reference guided assembly: JANTFE000000000 (Costus pulverulentus 151) # Genome coverage: 19.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027563935.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027563955.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 1280866559 all all all all spanned-gaps 100 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 278 all all all all scaffold-N50 119749194 all all all all scaffold-L50 5 all all all all scaffold-N75 110090084 all all all all scaffold-N90 18456255 all all all all contig-count 378 all all all all contig-N50 21722320 all all all all contig-L50 17 all all all all total-gap-length 10000 all all all all molecule-count 9 all all all all top-level-count 278 all all all all component-count 278 all all all all gc-perc 41 Primary Assembly all all all total-length 1280866559 Primary Assembly all all all ungapped-length 1280856559 Primary Assembly all all all scaffold-count 278 Primary Assembly all all all scaffold-N50 119749194 Primary Assembly all all all spanned-gaps 100 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 41 Primary Assembly all all assembled-molecule total-length 1121682386 Primary Assembly all all assembled-molecule ungapped-length 1121672486 Primary Assembly all all assembled-molecule scaffold-count 9 Primary Assembly all all assembled-molecule scaffold-N50 126658469 Primary Assembly all all assembled-molecule spanned-gaps 99 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 40.5 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 159184173 Primary Assembly na na unplaced-scaffold ungapped-length 159184073 Primary Assembly na na unplaced-scaffold scaffold-count 269 Primary Assembly na na unplaced-scaffold scaffold-N50 2950708 Primary Assembly na na unplaced-scaffold spanned-gaps 1 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 43.5 Primary Assembly 1 Chromosome all total-length 147883779 Primary Assembly 1 Chromosome all ungapped-length 147882279 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 147883779 Primary Assembly 1 Chromosome all spanned-gaps 15 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 40.5 Primary Assembly 1 Chromosome assembled-molecule total-length 147883779 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 147882279 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 147883779 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 15 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 163078524 Primary Assembly 2 Chromosome all ungapped-length 163076824 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 163078524 Primary Assembly 2 Chromosome all spanned-gaps 17 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 40.5 Primary Assembly 2 Chromosome assembled-molecule total-length 163078524 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 163076824 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 163078524 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 17 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 126658469 Primary Assembly 3 Chromosome all ungapped-length 126656969 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 126658469 Primary Assembly 3 Chromosome all spanned-gaps 15 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 40 Primary Assembly 3 Chromosome assembled-molecule total-length 126658469 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 126656969 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 126658469 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 15 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 40 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 110146015 Primary Assembly 4 Chromosome all ungapped-length 110144815 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 110146015 Primary Assembly 4 Chromosome all spanned-gaps 12 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 40.5 Primary Assembly 4 Chromosome assembled-molecule total-length 110146015 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 110144815 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 110146015 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 12 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 141194417 Primary Assembly 5 Chromosome all ungapped-length 141193717 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 141194417 Primary Assembly 5 Chromosome all spanned-gaps 7 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 40.5 Primary Assembly 5 Chromosome assembled-molecule total-length 141194417 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 141193717 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 141194417 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 7 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 119749194 Primary Assembly 6 Chromosome all ungapped-length 119748794 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 119749194 Primary Assembly 6 Chromosome all spanned-gaps 4 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 40.5 Primary Assembly 6 Chromosome assembled-molecule total-length 119749194 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 119748794 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 119749194 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 4 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 89815090 Primary Assembly 7 Chromosome all ungapped-length 89814090 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 89815090 Primary Assembly 7 Chromosome all spanned-gaps 10 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 40 Primary Assembly 7 Chromosome assembled-molecule total-length 89815090 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 89814090 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 89815090 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 10 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 40 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 110090084 Primary Assembly 8 Chromosome all ungapped-length 110089184 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 110090084 Primary Assembly 8 Chromosome all spanned-gaps 9 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 40.5 Primary Assembly 8 Chromosome assembled-molecule total-length 110090084 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 110089184 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 110090084 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 9 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 113066814 Primary Assembly 9 Chromosome all ungapped-length 113065814 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 113066814 Primary Assembly 9 Chromosome all spanned-gaps 10 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 40.5 Primary Assembly 9 Chromosome assembled-molecule total-length 113066814 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 113065814 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 113066814 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 10 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 40.5 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0