# Assembly Statistics Report # Assembly name: Papaya1.0 # Organism name: Carica papaya (papaya) # Infraspecific name: cultivar=SunUp # Taxid: 3649 # BioSample: SAMN02953710 # BioProject: PRJNA20267 # Submitter: The Papaya Genome Sequencing Consortium # Date: 2008-05-06 # Assembly type: haploid # Release type: minor # Assembly level: Scaffold # Genome representation: full # WGS project: ABIM01 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000150535.1 # RefSeq assembly accession: GCF_000150535.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000150545.1 GCF_000150545.1 Primary Assembly ## GCF_000121195.2 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 370418818 all all all all spanned-gaps 29719 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 17766 all all all all scaffold-N50 1089885 all all all all scaffold-L50 91 all all all all scaffold-N75 194028 all all all all scaffold-N90 8585 all all all all contig-count 47485 all all all all contig-N50 10650 all all all all contig-L50 7081 all all all all total-gap-length 98048973 all all all all molecule-count 11 all all all all top-level-count 17766 all all all all component-count 47485 all all all all gc-perc 35.5 Primary Assembly all all all total-length 369781828 Primary Assembly all all all ungapped-length 271732855 Primary Assembly all all all scaffold-count 17764 Primary Assembly all all all scaffold-N50 1089885 Primary Assembly all all all spanned-gaps 29719 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 35.5 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule scaffold-count 0 Primary Assembly all all assembled-molecule scaffold-N50 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 1700448 Primary Assembly all all unlocalized-scaffold ungapped-length 1700448 Primary Assembly all all unlocalized-scaffold scaffold-count 309 Primary Assembly all all unlocalized-scaffold scaffold-N50 11649 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold gc-perc 34.5 Primary Assembly na na unplaced-scaffold total-length 368081380 Primary Assembly na na unplaced-scaffold ungapped-length 270032407 Primary Assembly na na unplaced-scaffold scaffold-count 17455 Primary Assembly na na unplaced-scaffold scaffold-N50 1090247 Primary Assembly na na unplaced-scaffold spanned-gaps 29719 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 35.5 Primary Assembly LG1 Chromosome all total-length 178649 Primary Assembly LG1 Chromosome all ungapped-length 178649 Primary Assembly LG1 Chromosome all scaffold-count 24 Primary Assembly LG1 Chromosome all scaffold-N50 16973 Primary Assembly LG1 Chromosome all spanned-gaps 0 Primary Assembly LG1 Chromosome all unspanned-gaps 0 Primary Assembly LG1 Chromosome all gc-perc 35.5 Primary Assembly LG1 Chromosome assembled-molecule total-length 0 Primary Assembly LG1 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG1 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG1 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG1 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG1 Chromosome unlocalized-scaffold total-length 178649 Primary Assembly LG1 Chromosome unlocalized-scaffold ungapped-length 178649 Primary Assembly LG1 Chromosome unlocalized-scaffold scaffold-count 24 Primary Assembly LG1 Chromosome unlocalized-scaffold scaffold-N50 16973 Primary Assembly LG1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG1 Chromosome unlocalized-scaffold gc-perc 35.5 Primary Assembly LG2 Chromosome all total-length 145496 Primary Assembly LG2 Chromosome all ungapped-length 145496 Primary Assembly LG2 Chromosome all scaffold-count 24 Primary Assembly LG2 Chromosome all scaffold-N50 13570 Primary Assembly LG2 Chromosome all spanned-gaps 0 Primary Assembly LG2 Chromosome all unspanned-gaps 0 Primary Assembly LG2 Chromosome all gc-perc 35 Primary Assembly LG2 Chromosome assembled-molecule total-length 0 Primary Assembly LG2 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG2 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG2 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG2 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG2 Chromosome unlocalized-scaffold total-length 145496 Primary Assembly LG2 Chromosome unlocalized-scaffold ungapped-length 145496 Primary Assembly LG2 Chromosome unlocalized-scaffold scaffold-count 24 Primary Assembly LG2 Chromosome unlocalized-scaffold scaffold-N50 13570 Primary Assembly LG2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG2 Chromosome unlocalized-scaffold gc-perc 35 Primary Assembly LG3 Chromosome all total-length 213131 Primary Assembly LG3 Chromosome all ungapped-length 213131 Primary Assembly LG3 Chromosome all scaffold-count 47 Primary Assembly LG3 Chromosome all scaffold-N50 8961 Primary Assembly LG3 Chromosome all spanned-gaps 0 Primary Assembly LG3 Chromosome all unspanned-gaps 0 Primary Assembly LG3 Chromosome all gc-perc 34.5 Primary Assembly LG3 Chromosome assembled-molecule total-length 0 Primary Assembly LG3 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG3 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG3 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG3 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG3 Chromosome unlocalized-scaffold total-length 213131 Primary Assembly LG3 Chromosome unlocalized-scaffold ungapped-length 213131 Primary Assembly LG3 Chromosome unlocalized-scaffold scaffold-count 47 Primary Assembly LG3 Chromosome unlocalized-scaffold scaffold-N50 8961 Primary Assembly LG3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG3 Chromosome unlocalized-scaffold gc-perc 34.5 Primary Assembly LG4 Chromosome all total-length 327830 Primary Assembly LG4 Chromosome all ungapped-length 327830 Primary Assembly LG4 Chromosome all scaffold-count 33 Primary Assembly LG4 Chromosome all scaffold-N50 33429 Primary Assembly LG4 Chromosome all spanned-gaps 0 Primary Assembly LG4 Chromosome all unspanned-gaps 0 Primary Assembly LG4 Chromosome all gc-perc 34.5 Primary Assembly LG4 Chromosome assembled-molecule total-length 0 Primary Assembly LG4 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG4 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG4 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG4 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG4 Chromosome unlocalized-scaffold total-length 327830 Primary Assembly LG4 Chromosome unlocalized-scaffold ungapped-length 327830 Primary Assembly LG4 Chromosome unlocalized-scaffold scaffold-count 33 Primary Assembly LG4 Chromosome unlocalized-scaffold scaffold-N50 33429 Primary Assembly LG4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG4 Chromosome unlocalized-scaffold gc-perc 34.5 Primary Assembly LG5 Chromosome all total-length 163333 Primary Assembly LG5 Chromosome all ungapped-length 163333 Primary Assembly LG5 Chromosome all scaffold-count 41 Primary Assembly LG5 Chromosome all scaffold-N50 11350 Primary Assembly LG5 Chromosome all spanned-gaps 0 Primary Assembly LG5 Chromosome all unspanned-gaps 0 Primary Assembly LG5 Chromosome all gc-perc 34 Primary Assembly LG5 Chromosome assembled-molecule total-length 0 Primary Assembly LG5 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG5 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG5 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG5 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG5 Chromosome unlocalized-scaffold total-length 163333 Primary Assembly LG5 Chromosome unlocalized-scaffold ungapped-length 163333 Primary Assembly LG5 Chromosome unlocalized-scaffold scaffold-count 41 Primary Assembly LG5 Chromosome unlocalized-scaffold scaffold-N50 11350 Primary Assembly LG5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG5 Chromosome unlocalized-scaffold gc-perc 34 Primary Assembly LG6 Chromosome all total-length 205535 Primary Assembly LG6 Chromosome all ungapped-length 205535 Primary Assembly LG6 Chromosome all scaffold-count 39 Primary Assembly LG6 Chromosome all scaffold-N50 10654 Primary Assembly LG6 Chromosome all spanned-gaps 0 Primary Assembly LG6 Chromosome all unspanned-gaps 0 Primary Assembly LG6 Chromosome all gc-perc 34.5 Primary Assembly LG6 Chromosome assembled-molecule total-length 0 Primary Assembly LG6 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG6 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG6 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG6 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG6 Chromosome unlocalized-scaffold total-length 205535 Primary Assembly LG6 Chromosome unlocalized-scaffold ungapped-length 205535 Primary Assembly LG6 Chromosome unlocalized-scaffold scaffold-count 39 Primary Assembly LG6 Chromosome unlocalized-scaffold scaffold-N50 10654 Primary Assembly LG6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG6 Chromosome unlocalized-scaffold gc-perc 34.5 Primary Assembly LG7 Chromosome all total-length 96169 Primary Assembly LG7 Chromosome all ungapped-length 96169 Primary Assembly LG7 Chromosome all scaffold-count 22 Primary Assembly LG7 Chromosome all scaffold-N50 9865 Primary Assembly LG7 Chromosome all spanned-gaps 0 Primary Assembly LG7 Chromosome all unspanned-gaps 0 Primary Assembly LG7 Chromosome all gc-perc 34.5 Primary Assembly LG7 Chromosome assembled-molecule total-length 0 Primary Assembly LG7 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG7 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG7 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG7 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG7 Chromosome unlocalized-scaffold total-length 96169 Primary Assembly LG7 Chromosome unlocalized-scaffold ungapped-length 96169 Primary Assembly LG7 Chromosome unlocalized-scaffold scaffold-count 22 Primary Assembly LG7 Chromosome unlocalized-scaffold scaffold-N50 9865 Primary Assembly LG7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG7 Chromosome unlocalized-scaffold gc-perc 34.5 Primary Assembly LG8 Chromosome all total-length 170084 Primary Assembly LG8 Chromosome all ungapped-length 170084 Primary Assembly LG8 Chromosome all scaffold-count 41 Primary Assembly LG8 Chromosome all scaffold-N50 8444 Primary Assembly LG8 Chromosome all spanned-gaps 0 Primary Assembly LG8 Chromosome all unspanned-gaps 0 Primary Assembly LG8 Chromosome all gc-perc 34.5 Primary Assembly LG8 Chromosome assembled-molecule total-length 0 Primary Assembly LG8 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG8 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG8 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG8 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG8 Chromosome unlocalized-scaffold total-length 170084 Primary Assembly LG8 Chromosome unlocalized-scaffold ungapped-length 170084 Primary Assembly LG8 Chromosome unlocalized-scaffold scaffold-count 41 Primary Assembly LG8 Chromosome unlocalized-scaffold scaffold-N50 8444 Primary Assembly LG8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG8 Chromosome unlocalized-scaffold gc-perc 34.5 Primary Assembly LG9 Chromosome all total-length 200221 Primary Assembly LG9 Chromosome all ungapped-length 200221 Primary Assembly LG9 Chromosome all scaffold-count 38 Primary Assembly LG9 Chromosome all scaffold-N50 16553 Primary Assembly LG9 Chromosome all spanned-gaps 0 Primary Assembly LG9 Chromosome all unspanned-gaps 0 Primary Assembly LG9 Chromosome all gc-perc 33.5 Primary Assembly LG9 Chromosome assembled-molecule total-length 0 Primary Assembly LG9 Chromosome assembled-molecule ungapped-length 0 Primary Assembly LG9 Chromosome assembled-molecule scaffold-count 0 Primary Assembly LG9 Chromosome assembled-molecule scaffold-N50 0 Primary Assembly LG9 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly LG9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly LG9 Chromosome unlocalized-scaffold total-length 200221 Primary Assembly LG9 Chromosome unlocalized-scaffold ungapped-length 200221 Primary Assembly LG9 Chromosome unlocalized-scaffold scaffold-count 38 Primary Assembly LG9 Chromosome unlocalized-scaffold scaffold-N50 16553 Primary Assembly LG9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly LG9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG9 Chromosome unlocalized-scaffold gc-perc 33.5 non-nuclear all all all total-length 636990 non-nuclear all all all ungapped-length 636990 non-nuclear all all all scaffold-count 2 non-nuclear all all all scaffold-N50 476890 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all all gc-perc 43 non-nuclear all all assembled-molecule total-length 636990 non-nuclear all all assembled-molecule ungapped-length 636990 non-nuclear all all assembled-molecule scaffold-count 2 non-nuclear all all assembled-molecule scaffold-N50 476890 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all assembled-molecule gc-perc 43 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold scaffold-count 0 non-nuclear all all unlocalized-scaffold scaffold-N50 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear MT Mitochondrion all total-length 476890 non-nuclear MT Mitochondrion all ungapped-length 476890 non-nuclear MT Mitochondrion all scaffold-count 1 non-nuclear MT Mitochondrion all scaffold-N50 476890 non-nuclear MT Mitochondrion all spanned-gaps 0 non-nuclear MT Mitochondrion all unspanned-gaps 0 non-nuclear MT Mitochondrion all gc-perc 45 non-nuclear MT Mitochondrion assembled-molecule total-length 476890 non-nuclear MT Mitochondrion assembled-molecule ungapped-length 476890 non-nuclear MT Mitochondrion assembled-molecule scaffold-count 1 non-nuclear MT Mitochondrion assembled-molecule scaffold-N50 476890 non-nuclear MT Mitochondrion assembled-molecule spanned-gaps 0 non-nuclear MT Mitochondrion assembled-molecule unspanned-gaps 0 non-nuclear MT Mitochondrion assembled-molecule gc-perc 45 non-nuclear MT Mitochondrion unlocalized-scaffold total-length 0 non-nuclear MT Mitochondrion unlocalized-scaffold ungapped-length 0 non-nuclear MT Mitochondrion unlocalized-scaffold scaffold-count 0 non-nuclear MT Mitochondrion unlocalized-scaffold scaffold-N50 0 non-nuclear MT Mitochondrion unlocalized-scaffold spanned-gaps 0 non-nuclear MT Mitochondrion unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 160100 non-nuclear Pltd Chloroplast all ungapped-length 160100 non-nuclear Pltd Chloroplast all scaffold-count 1 non-nuclear Pltd Chloroplast all scaffold-N50 160100 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast all gc-perc 37 non-nuclear Pltd Chloroplast assembled-molecule total-length 160100 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 160100 non-nuclear Pltd Chloroplast assembled-molecule scaffold-count 1 non-nuclear Pltd Chloroplast assembled-molecule scaffold-N50 160100 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule gc-perc 37 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-count 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-N50 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0