# Assembly Statistics Report # Assembly name: brapa_z1_v2 # Organism name: Brassica rapa (field mustard) # Taxid: 3711 # BioSample: SAMEA4646473 # BioProject: PRJEB26620 # Submitter: Genoscope # Date: 2021-07-15 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: OVXL03 # Genome coverage: 186x # GenBank assembly accession: GCA_900412535.3 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_900412534.3 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 443953949 all all all all spanned-gaps 85 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 210 all all all all scaffold-N50 39217719 all all all all scaffold-L50 5 all all all all scaffold-N75 28616645 all all all all scaffold-N90 4034065 all all all all contig-count 295 all all all all contig-N50 10256333 all all all all contig-L50 14 all all all all total-gap-length 2917545 all all all all molecule-count 10 all all all all top-level-count 210 all all all all component-count 210 all all all all gc-perc 38 Primary Assembly all all all total-length 443953949 Primary Assembly all all all ungapped-length 441036404 Primary Assembly all all all scaffold-count 210 Primary Assembly all all all scaffold-N50 39217719 Primary Assembly all all all spanned-gaps 85 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 38 Primary Assembly all all assembled-molecule total-length 386053793 Primary Assembly all all assembled-molecule ungapped-length 383453211 Primary Assembly all all assembled-molecule scaffold-count 10 Primary Assembly all all assembled-molecule scaffold-N50 39625516 Primary Assembly all all assembled-molecule spanned-gaps 77 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 37.5 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 57900156 Primary Assembly na na unplaced-scaffold ungapped-length 57583193 Primary Assembly na na unplaced-scaffold scaffold-count 200 Primary Assembly na na unplaced-scaffold scaffold-N50 1342450 Primary Assembly na na unplaced-scaffold spanned-gaps 8 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 41 Primary Assembly A01 Chromosome all total-length 39217719 Primary Assembly A01 Chromosome all ungapped-length 38670078 Primary Assembly A01 Chromosome all scaffold-count 1 Primary Assembly A01 Chromosome all scaffold-N50 39217719 Primary Assembly A01 Chromosome all spanned-gaps 14 Primary Assembly A01 Chromosome all unspanned-gaps 0 Primary Assembly A01 Chromosome all gc-perc 36 Primary Assembly A01 Chromosome assembled-molecule total-length 39217719 Primary Assembly A01 Chromosome assembled-molecule ungapped-length 38670078 Primary Assembly A01 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A01 Chromosome assembled-molecule scaffold-N50 39217719 Primary Assembly A01 Chromosome assembled-molecule spanned-gaps 14 Primary Assembly A01 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A01 Chromosome assembled-molecule gc-perc 36 Primary Assembly A01 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A01 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A01 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A01 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A01 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A01 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A02 Chromosome all total-length 32490828 Primary Assembly A02 Chromosome all ungapped-length 32461822 Primary Assembly A02 Chromosome all scaffold-count 1 Primary Assembly A02 Chromosome all scaffold-N50 32490828 Primary Assembly A02 Chromosome all spanned-gaps 3 Primary Assembly A02 Chromosome all unspanned-gaps 0 Primary Assembly A02 Chromosome all gc-perc 34.5 Primary Assembly A02 Chromosome assembled-molecule total-length 32490828 Primary Assembly A02 Chromosome assembled-molecule ungapped-length 32461822 Primary Assembly A02 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A02 Chromosome assembled-molecule scaffold-N50 32490828 Primary Assembly A02 Chromosome assembled-molecule spanned-gaps 3 Primary Assembly A02 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A02 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly A02 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A02 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A02 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A02 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A02 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A02 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A03 Chromosome all total-length 39625516 Primary Assembly A03 Chromosome all ungapped-length 39331703 Primary Assembly A03 Chromosome all scaffold-count 1 Primary Assembly A03 Chromosome all scaffold-N50 39625516 Primary Assembly A03 Chromosome all spanned-gaps 5 Primary Assembly A03 Chromosome all unspanned-gaps 0 Primary Assembly A03 Chromosome all gc-perc 36 Primary Assembly A03 Chromosome assembled-molecule total-length 39625516 Primary Assembly A03 Chromosome assembled-molecule ungapped-length 39331703 Primary Assembly A03 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A03 Chromosome assembled-molecule scaffold-N50 39625516 Primary Assembly A03 Chromosome assembled-molecule spanned-gaps 5 Primary Assembly A03 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A03 Chromosome assembled-molecule gc-perc 36 Primary Assembly A03 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A03 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A03 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A03 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A03 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A03 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A04 Chromosome all total-length 22512326 Primary Assembly A04 Chromosome all ungapped-length 22512013 Primary Assembly A04 Chromosome all scaffold-count 1 Primary Assembly A04 Chromosome all scaffold-N50 22512326 Primary Assembly A04 Chromosome all spanned-gaps 4 Primary Assembly A04 Chromosome all unspanned-gaps 0 Primary Assembly A04 Chromosome all gc-perc 34 Primary Assembly A04 Chromosome assembled-molecule total-length 22512326 Primary Assembly A04 Chromosome assembled-molecule ungapped-length 22512013 Primary Assembly A04 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A04 Chromosome assembled-molecule scaffold-N50 22512326 Primary Assembly A04 Chromosome assembled-molecule spanned-gaps 4 Primary Assembly A04 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A04 Chromosome assembled-molecule gc-perc 34 Primary Assembly A04 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A04 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A04 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A04 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A04 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A04 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A05 Chromosome all total-length 45267812 Primary Assembly A05 Chromosome all ungapped-length 45009809 Primary Assembly A05 Chromosome all scaffold-count 1 Primary Assembly A05 Chromosome all scaffold-N50 45267812 Primary Assembly A05 Chromosome all spanned-gaps 11 Primary Assembly A05 Chromosome all unspanned-gaps 0 Primary Assembly A05 Chromosome all gc-perc 39 Primary Assembly A05 Chromosome assembled-molecule total-length 45267812 Primary Assembly A05 Chromosome assembled-molecule ungapped-length 45009809 Primary Assembly A05 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A05 Chromosome assembled-molecule scaffold-N50 45267812 Primary Assembly A05 Chromosome assembled-molecule spanned-gaps 11 Primary Assembly A05 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A05 Chromosome assembled-molecule gc-perc 39 Primary Assembly A05 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A05 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A05 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A05 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A05 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A05 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A06 Chromosome all total-length 58997078 Primary Assembly A06 Chromosome all ungapped-length 58501685 Primary Assembly A06 Chromosome all scaffold-count 1 Primary Assembly A06 Chromosome all scaffold-N50 58997078 Primary Assembly A06 Chromosome all spanned-gaps 12 Primary Assembly A06 Chromosome all unspanned-gaps 0 Primary Assembly A06 Chromosome all gc-perc 41 Primary Assembly A06 Chromosome assembled-molecule total-length 58997078 Primary Assembly A06 Chromosome assembled-molecule ungapped-length 58501685 Primary Assembly A06 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A06 Chromosome assembled-molecule scaffold-N50 58997078 Primary Assembly A06 Chromosome assembled-molecule spanned-gaps 12 Primary Assembly A06 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A06 Chromosome assembled-molecule gc-perc 41 Primary Assembly A06 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A06 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A06 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A06 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A06 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A06 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A07 Chromosome all total-length 28616645 Primary Assembly A07 Chromosome all ungapped-length 28546460 Primary Assembly A07 Chromosome all scaffold-count 1 Primary Assembly A07 Chromosome all scaffold-N50 28616645 Primary Assembly A07 Chromosome all spanned-gaps 3 Primary Assembly A07 Chromosome all unspanned-gaps 0 Primary Assembly A07 Chromosome all gc-perc 35 Primary Assembly A07 Chromosome assembled-molecule total-length 28616645 Primary Assembly A07 Chromosome assembled-molecule ungapped-length 28546460 Primary Assembly A07 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A07 Chromosome assembled-molecule scaffold-N50 28616645 Primary Assembly A07 Chromosome assembled-molecule spanned-gaps 3 Primary Assembly A07 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A07 Chromosome assembled-molecule gc-perc 35 Primary Assembly A07 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A07 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A07 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A07 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A07 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A07 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A08 Chromosome all total-length 30744747 Primary Assembly A08 Chromosome all ungapped-length 30543258 Primary Assembly A08 Chromosome all scaffold-count 1 Primary Assembly A08 Chromosome all scaffold-N50 30744747 Primary Assembly A08 Chromosome all spanned-gaps 3 Primary Assembly A08 Chromosome all unspanned-gaps 0 Primary Assembly A08 Chromosome all gc-perc 36.5 Primary Assembly A08 Chromosome assembled-molecule total-length 30744747 Primary Assembly A08 Chromosome assembled-molecule ungapped-length 30543258 Primary Assembly A08 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A08 Chromosome assembled-molecule scaffold-N50 30744747 Primary Assembly A08 Chromosome assembled-molecule spanned-gaps 3 Primary Assembly A08 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A08 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly A08 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A08 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A08 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A08 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A08 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A08 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A09 Chromosome all total-length 68194707 Primary Assembly A09 Chromosome all ungapped-length 67490068 Primary Assembly A09 Chromosome all scaffold-count 1 Primary Assembly A09 Chromosome all scaffold-N50 68194707 Primary Assembly A09 Chromosome all spanned-gaps 21 Primary Assembly A09 Chromosome all unspanned-gaps 0 Primary Assembly A09 Chromosome all gc-perc 39 Primary Assembly A09 Chromosome assembled-molecule total-length 68194707 Primary Assembly A09 Chromosome assembled-molecule ungapped-length 67490068 Primary Assembly A09 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A09 Chromosome assembled-molecule scaffold-N50 68194707 Primary Assembly A09 Chromosome assembled-molecule spanned-gaps 21 Primary Assembly A09 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A09 Chromosome assembled-molecule gc-perc 39 Primary Assembly A09 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A09 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A09 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A09 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A09 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A09 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly A10 Chromosome all total-length 20386415 Primary Assembly A10 Chromosome all ungapped-length 20386315 Primary Assembly A10 Chromosome all scaffold-count 1 Primary Assembly A10 Chromosome all scaffold-N50 20386415 Primary Assembly A10 Chromosome all spanned-gaps 1 Primary Assembly A10 Chromosome all unspanned-gaps 0 Primary Assembly A10 Chromosome all gc-perc 36.5 Primary Assembly A10 Chromosome assembled-molecule total-length 20386415 Primary Assembly A10 Chromosome assembled-molecule ungapped-length 20386315 Primary Assembly A10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly A10 Chromosome assembled-molecule scaffold-N50 20386415 Primary Assembly A10 Chromosome assembled-molecule spanned-gaps 1 Primary Assembly A10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly A10 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly A10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly A10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly A10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly A10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly A10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly A10 Chromosome unlocalized-scaffold unspanned-gaps 0