marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t4182.M000008.1 t4182 InD-A 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 ATTTAGAGTCCTTATTCAGAGTGGG 8498814 8498838 CGTGTGTTGCGAGCCTCC 8498948 8498931 NA C [NA]; CGCAGCAGCG [NA] NA InD-AF: ATTTAGAGTCCTTATTCAGAGTGGG InD-AR: CGTGTGTTGCGAGCCTCC 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M000124.1 t4182 InD-Q 1 Others t4182.G001 S_indicum_v1.0 NC_026153.1 GGCCTTGGTGAAGCTTATT 5889319 5889337 CTTGAGCAAGGTTCCAATTT 5889538 5889519 NA T [NA]; TACTGTTAACAAAATTCAG [NA] NA InD-QF: CTTGAGCAAGGTTCCAATTT InD-QR: GGCCTTGGTGAAGCTTATT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M000774.1 t4182 SBI005 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 GGTTCTTGAAATCTTGAATGTG 14265125 14265146 GCAACAGCAGATATCTAAACCA 14265250 14265229 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000775.1 t4182 SBI007 1 Others t4182.G001 S_indicum_v1.0 NC_026156.1 TCGAATCTTGTCCTCTCTCTC 5891924 5891944 GCTGAACTGAACTTGTTTGTGA 5892038 5892017 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000776.1 t4182 SBI009 1 Others t4182.G001 S_indicum_v1.0 NC_026151.1 TCTGGAGAAACAACACTAGTCA 6287136 6287157 CCCGTAAACGACAGAGGA 6287246 6287229 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000777.1 t4182 SBI012 1 Others t4182.G001 S_indicum_v1.0 NC_026145.1 TTTGCTATACATCTGCCACTC 9652507 9652527 GGCACTACAACGTTCATTTT 9652609 9652590 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000778.1 t4182 SBI013 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 TCATGGACATGCATAATTTCT 10986154 10986174 GGCTAATGTTGCAGATTTAGAT 10986256 10986235 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000779.1 t4182 SBI014 1 Others t4182.G001 S_indicum_v1.0 NC_026151.1 TGACATGAGTTATGGATGATGA 9730624 9730645 GGCAAGGAGAATGCTTTT 9730725 9730708 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000780.1 t4182 SBI019 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 GGTACTCTGGATTAAGGTCAAA 3189491 3189512 AACAAGAACAGTACGACGTTTT 3189583 3189562 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000781.1 t4182 SBI021 1 Others t4182.G001 S_indicum_v1.0 NC_026145.1 CCACTTCTATCCAAGAAGAAAA 10103993 10104014 CAATATGTTGCTCAAAGTTTCA 10104079 10104058 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000782.1 t4182 SBI023 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 TCGCTGGTACTCAGAATGAT 3236113 3236132 TCCCAATCTTTATGAATCAATG 3236196 3236175 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000783.1 t4182 SBI025 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 GCAACCATGATTTAATTCTTCT 23255745 23255766 CACATCGTCTCGACTATTTTGA 23255851 23255830 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000784.1 t4182 SBI027 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TCCATCCACACCCACAC 16784602 16784618 GGCAAGGAAATAATTAACAAAA 16784684 16784663 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000785.1 t4182 SBI028 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TTCACCATATTACCTTCCTTTC 12990029 12990050 TCTGGTTAACCTGGGATTTT 12990113 12990094 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000786.1 t4182 SBI030 1 Others t4182.G001 S_indicum_v1.0 NC_026151.1 GCGATTCGTATGCCATTTT 7852629 7852647 GGAAGCACCAGGAAAATACA 7852709 7852690 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000787.1 t4182 SBI031 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 GAGCATTCAATACTTTTGCTG 824011 824031 CCGGAAGTAATAAACTCTGCTA 824092 824071 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000788.1 t4182 SBI032 1 Others t4182.G001 S_indicum_v1.0 NC_026153.1 TCCTCACTAAAATTGTTATCCC 3624532 3624553 CCTGAAAGGAAATCATACTCAA 3624611 3624590 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000789.1 t4182 SBI033 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 GGGGTTGTCAAAGTTAGAAATA 9721987 9722008 CAAGCGCAACAATATACAATAC 9722065 9722044 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000790.1 t4182 SBI034 1 Others t4182.G001 S_indicum_v1.0 NW_011629800.1 TCACTGTTCCTCCTCTAACACT 3580 3601 TGCCCTTCAAATAGTAAAAGAG 3658 3637 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000791.1 t4182 SBI035 1 Others t4182.G001 S_indicum_v1.0 NW_011628069.1 ATGATGTTAAGAAGGTGGAAAA 25302 25323 TTTCTCCCTCTCTCTTTCTGTA 25383 25362 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000792.1 t4182 SBI036 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 GAGGAAACGTTCGTACTTTCT 213593 213613 CAAAGGGATCACACAAGTGAC 213668 213648 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000793.1 t4182 SBI041 1 Others t4182.G001 S_indicum_v1.0 NC_026152.1 TGTGTGTGTGTGTGAGAAAGA 2610511 2610531 CCTGCAAATTCAAACATTAAAC 2610584 2610563 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000794.1 t4182 SBI042 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 AGCGAAACATATGTTGTGTTTA 24234738 24234759 TAACAGGAAGGAAAAGGTAAAA 24234810 24234789 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000795.1 t4182 SBI043 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 GGGTTTGTGCCAAAACTT 652557 652574 CCAATGGGACTGTGATGTA 652628 652610 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000796.1 t4182 SBI048 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 ACAGGGTCCTCCAGGTG 9922717 9922733 GAAAGAAACCAGAGAGCAAAA 9922786 9922766 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000797.1 t4182 SBI050 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 CAGTCACACATTGGTGGTATAA 10490715 10490736 CATTTGGATTGGAGGAACATA 10490789 10490769 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000798.1 t4182 SBI051 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 CCCAGAAATAAGAAATACAGCA 14228099 14228120 AAAGAGAAGAAAAGGAGAGGAA 14228167 14228146 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000799.1 t4182 SBI054 1 Others t4182.G001 S_indicum_v1.0 NC_026156.1 GAAGACAGGGAATGGGG 2970634 2970650 CCTTCCCACTTTCTTCTTCT 2970700 2970681 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000800.1 t4182 SBI055 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 GATTTCAAAATTCCAAACCAA 14183429 14183449 TCGACAGTGAAGAAGAAAGAGT 14183495 14183474 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000801.1 t4182 SBI057 1 Others t4182.G001 S_indicum_v1.0 NC_026156.1 TTCCGAGTACATCAGGTAAAA 4741751 4741771 AATGAAATGTGTTGGGAAAA 4741818 4741799 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000802.1 t4182 SBI058 1 Others t4182.G001 S_indicum_v1.0 NC_026158.1 AAACTAACGAACCCTCTCTCTC 931006 931027 CAGTGGAAATCGGACGG 931077 931061 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000803.1 t4182 SBI060 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 TGATCAAAGCAGAGTAATTCAA 11265444 11265465 AATGTTGGTTTCTTTCTCATGT 11265510 11265489 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000804.1 t4182 SBI061 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 CCAAGACTTGCGAGAGTGAG 8661156 8661175 ACAGCAGCGTGCGGTTT 8661219 8661203 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000805.1 t4182 SBI062 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 TCTGCATTTAGATAATGGATGA 2565502 2565523 GGCACATAGAAAGCTTGATACT 2565565 2565544 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000806.1 t4182 SBI064 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 GAATAACCCAAGAACCAAATAA 13946468 13946489 CGAGTCTGGTGGAAATATAAAC 13946534 13946513 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000808.1 t4182 SBI071 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 TGCTTGTAGGCACTTCTTTT 10427390 10427409 AAATCCAACGGAAGGCA 10427444 10427428 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000809.1 t4182 SBI075 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 GATGGCAGACGGAACAC 6306597 6306613 CATTAACCATAGCTCCTGTTTT 6306648 6306627 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000810.1 t4182 SBI001 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 GCTGATGGTTGATCTTTACATT 17224888 17224909 TTGATGGATTTCCATTTATTTT 17225039 17225018 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000811.1 t4182 SBI002 1 Others t4182.G001 S_indicum_v1.0 NW_011628205.1 CCTGAATTATTGCATCTTCTTT 2586 2607 CCATACAAGATTTTCAGCGT 2726 2707 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000812.1 t4182 SBI003 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 TGGAGCTGTAACATATCCTTTT 13847582 13847603 GAGTCATAACTGCAGGTAGCAT 13847719 13847698 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000816.1 t4182 SBI011 1 Others t4182.G001 S_indicum_v1.0 NC_026158.1 CAATCGTTCGTATACCCAGT 603025 603044 CACACATCGAGTGTACTTCAAA 603129 603108 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000817.1 t4182 SBI015 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 CCGTACTCTAATTTCTTTTCCC 4216931 4216952 GTGGGACTGAAAAGGAAAA 4217027 4217009 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000818.1 t4182 SBI016 1 Others t4182.G001 S_indicum_v1.0 NC_026152.1 CTTTGACCATGAACCTTTACA 559203 559223 CGAGTGTTTATCTTTTCTGGAC 559298 559277 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000819.1 t4182 SBI017 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 GTGCTCTCATTCTTGACTTTG 24856911 24856931 GGTGAGCTAGTGGTGACTAAAA 24857005 24856984 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000820.1 t4182 SBI018 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 CCCTTGAAAGCCTGTGTT 9411090 9411107 CCGAAAACCAAAATAGTACAAA 9411185 9411164 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000821.1 t4182 SBI020 1 Others t4182.G001 S_indicum_v1.0 NC_026153.1 GCGCAGCATATACTATTGCTT 1323087 1323107 GGCATGATCTATCAACAATCAA 1323175 1323154 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000823.1 t4182 SBI024 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 GCAAACAATTTTGTAGAAACCA 6364772 6364793 GAATCGGAAGTAGATTGAGAGA 6364855 6364834 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000824.1 t4182 SBI026 1 Others t4182.G001 S_indicum_v1.0 NC_026152.1 CATGTCTCTTGATGCTCCTTT 17271326 17271346 GCCGTTGATTGCCAAAA 17271409 17271393 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000825.1 t4182 SBI037 1 Others t4182.G001 S_indicum_v1.0 NC_026159.1 GCAATTGAAAATATACACAGCC 2613882 2613903 TGAGCTCATATTCCAAAGAAA 2613957 2613937 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000826.1 t4182 SBI038 1 Others t4182.G001 S_indicum_v1.0 NC_026151.1 TGTCAGCAGATTCAGCAAG 6160516 6160534 CCATTAGCTGCATAGATTTTGT 6160591 6160570 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000827.1 t4182 SBI039 1 Others t4182.G001 S_indicum_v1.0 NW_011628085.1 GAACGTGACATAATCAAATGGT 140721 140742 TGCCACAATTTGGTTTAAGA 140795 140776 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000828.1 t4182 SBI040 1 Others t4182.G001 S_indicum_v1.0 NW_011628050.1 GCATAAATGTGGTTTAGGAATC 224477 224498 ACTCAAAGCAACAATCACATAA 224550 224529 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000829.1 t4182 SBI044 1 Others t4182.G001 S_indicum_v1.0 NW_011628051.1 AAATTTAACATATCGCAACCAA 523657 523678 TCTGAATCTTGCTTGATTGTT 523728 523708 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000830.1 t4182 SBI045 1 Others t4182.G001 S_indicum_v1.0 NC_026148.1 TCAGTGCTCCCTTGTGTCT 3319822 3319840 TGACTTCATTCACATGAGTCC 3319894 3319874 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000831.1 t4182 SBI046 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 CGTTGCTTTGCTACTGTTATCA 12941032 12941053 ATGGAGATCAGAACACCAAA 12941102 12941083 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000832.1 t4182 SBI047 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 TGAAGCATAGTCCATTCATAAA 15588254 15588275 GGAGAAGTTATCAACTCCTGAA 15588323 15588302 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000833.1 t4182 SBI049 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 TGGGAAATATTAGCGTTACAGA 19923219 19923240 TATACAATTTGCACGGGAA 19923292 19923274 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000834.1 t4182 SBI052 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 CCGGAATACCAACGTTTT 24196382 24196399 TGAGCTCAGGAGGAGAGAGA 24196449 24196430 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000835.1 t4182 SBI053 1 Others t4182.G001 S_indicum_v1.0 NC_026155.1 AAGACAGGGACATGGAAAA 13927985 13928003 CATGATAACCCTCCTGATATTC 13928051 13928030 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000836.1 t4182 SBI056 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TTCCATCTTCAAATGATCTTGT 4954753 4954774 GCACCAAGCATATCTCTCTC 4954821 4954802 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000837.1 t4182 SBI059 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 AAATGTGCCTGCTGCTG 9028187 9028203 TGGTTCCACCATCTATAGCAG 9028251 9028231 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000838.1 t4182 SBI063 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 TTTTAGGCTTTCCCAACAA 17837446 17837464 CGAGATTGCTAGTCCAAAAG 17837508 17837489 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000839.1 t4182 SBI065 1 Others t4182.G001 S_indicum_v1.0 NC_026146.1 CAATTACTCTACATCCCCAAAA 2162913 2162934 TGGATTTGTCCTTCTGATTAAC 2162976 2162955 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000840.1 t4182 SBI067 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 TCCTTCTCAAAATAGGCATAAA 10307468 10307489 TTTTGAGTTTGCAAATCTGTT 10307529 10307509 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000841.1 t4182 SBI068 1 Others t4182.G001 S_indicum_v1.0 NC_026148.1 GCATCCAGTATGCATTAATTCT 8587425 8587446 CCACTCCTGCATAACATTTT 8587483 8587464 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000843.1 t4182 SBI072 1 Others t4182.G001 S_indicum_v1.0 NC_026148.1 GACTGTCTTAAGGGGTGGG 13748933 13748951 ATGGATGCAGCAGGCAG 13748986 13748970 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000844.1 t4182 SBI073 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 GCCAACTTTTCTATAAATTCCA 2239005 2239026 CAGTTCTTCAATATGATCACCA 2239119 2239098 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000845.1 t4182 SBI076 1 Others t4182.G001 S_indicum_v1.0 NC_026153.1 AGCTTTTCTTCTCCATAGATCA 5438662 5438683 CAGACTTCACACTTTCTTGTGG 5438712 5438691 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000846.1 t4182 SBI077 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 CAAAAGACAAAGAAGAAAGCA 7984079 7984099 GCATGGAATAGACCCCTTG 7984144 7984126 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000847.1 t4182 SBI078 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 TCCCATCTGCCGAGTATC 729665 729682 AAAGAAGTTCAATTCAAATGGA 729764 729743 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000848.1 t4182 SBI079 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TTGTTTGGTTTGCTGAGG 3847240 3847257 CAAACCAAACATCAGCGA 3847311 3847294 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000849.1 t4182 SBI008 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 TCAGCGTCCTATGGTGTG 14308521 14308538 CGGCGCTTACACACACA 14308635 14308619 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000851.1 t4182 SBI066 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 ATCACTCGTCTTACCAACTCTC 3161352 3161373 GAGTGCTTGTCTGAAGAGAGAG 3161413 3161392 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M000852.1 t4182 SBI074 1 Others t4182.G001 S_indicum_v1.0 NC_026150.1 GACCATGACCACGACCA 1469030 1469046 TGACTGTGACCGTGACTGT 1469082 1469064 NA NA NA 10.1186/1471-2156-15-35 24641723 1 S_indicum_v1.0 t4182.M004869.1 t4182 InD-B 1 Others t4182.G001 S_indicum_v1.0 NC_026145.1 TTGTTTTTGTAGTCTGCTTTTTAG 16637989 16638012 AGCCACATTAAACACCAAAAG 16638085 16638065 NA A [NA]; AATTTTG [NA] NA InD-BF: TTGTTTTTGTAGTCTGCTTTTTAG InD-BR: AGCCACATTAAACACCAAAAG 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004870.1 t4182 InD-C 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TACCCAAGTTACCTGTTTATTGA 12259533 12259555 AGTATGACAAACACAATCCGAA 12259636 12259615 NA A [NA]; AAGCAT [NA] NA InD-CF: TACCCAAGTTACCTGTTTATTGA InD-CR: AGTATGACAAACACAATCCGAA 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004871.1 t4182 InD-D 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 GGAGACGTCGCTTGTGAGG 21123939 21123957 AGTTAGGAATATAGGCTCGACAGA 21124106 21124083 NA T [NA]; TATACCTTG [NA] NA InD-DF: AGTTAGGAATATAGGCTCGACAGA InD-DR: GGAGACGTCGCTTGTGAGG 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004872.1 t4182 InD-E 1 Others t4182.G001 S_indicum_v1.0 NC_026147.1 CTCTTTTGGCTCCCCGAC 18362867 18362884 GCAACATTTTCTCAGTCATCGT 18362971 18362950 NA C [NA]; CTCAATGCCAGCAAAA [NA] NA InD-EF: GCAACATTTTCTCAGTCATCGT InD-ER: CTCTTTTGGCTCCCCGAC 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004873.1 t4182 InD-F 1 Others t4182.G001 S_indicum_v1.0 NC_026148.1 AGCTTGAAGAACAATTCATTCA 8466095 8466116 TTGTGTTTGAGATGGTCTGTAAT 8466188 8466166 NA A [NA]; AAATT [NA] NA InD-FF: AGCTTGAAGAACAATTCATTCA InD-FR: TTGTGTTTGAGATGGTCTGTAAT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004874.1 t4182 InD-G 1 Others t4182.G001 S_indicum_v1.0 NC_026151.1 CACCGTCTGCGTAGGATGC 10901920 10901938 AAGAACAACCGCCGATGG 10902045 10902028 NA G [NA]; GGGGAACTTTTTATA [NA] NA InD-GF: CACCGTCTGCGTAGGATGC InD-GR: AAGAACAACCGCCGATGG 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004875.1 t4182 InD-H 1 Others t4182.G001 S_indicum_v1.0 NC_026145.1 GTCAGAATTGCAGCCACAGTT 10620163 10620183 AGGATCGGTGAAGCAGAGGA 10620267 10620248 NA A [NA]; ATATATG [NA] NA InD-HF: GTCAGAATTGCAGCCACAGTT InD-HR: AGGATCGGTGAAGCAGAGGA 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004876.1 t4182 InD-I 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 GGATCAGAATTAAATGACAAGGAGT 1458149 1458173 AATCTTTGGTTCATAGGCTTTTTAG 1458313 1458289 NA T [NA]; TTCCCAC [NA] NA InD-IF: AATCTTTGGTTCATAGGCTTTTTAG InD-IR: GGATCAGAATTAAATGACAAGGAGT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004877.1 t4182 InD-J 1 Others t4182.G001 S_indicum_v1.0 NC_026156.1 GGCGAGTGCGAGTCCCC 6225061 6225077 GTATCAATCAACTATAGCGTCCGTC 6225165 6225141 NA G [NA]; GGAGTGA [NA] NA InD-JF: GGCGAGTGCGAGTCCCC InD-JR: GTATCAATCAACTATAGCGTCCGTC 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004878.1 t4182 InD-K 1 Others t4182.G001 S_indicum_v1.0 NC_026152.1 CAAAAAGCATCATCTATCTATCAGT 12095196 12095220 CTCAAGCATTACACATCGTCCT 12095325 12095304 NA T [NA]; TTGCTGCTGC [NA] NA InD-KF: CAAAAAGCATCATCTATCTATCAGT InD-KR: CTCAAGCATTACACATCGTCCT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004879.1 t4182 InD-L 1 Others t4182.G001 S_indicum_v1.0 NC_026154.1 ACCTGGCAATTCAGCCTC 399045 399062 GCAGTATTCATGTTTCAGACTAGTTT 399152 399127 NA G [NA]; GTGAACCACAAAGTGA [NA] NA InD-LF: ACCTGGCAATTCAGCCTC InD-LR: GCAGTATTCATGTTTCAGACTAGTTT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004880.1 t4182 InD-M 1 Others t4182.G001 S_indicum_v1.0 NC_026149.1 TAACATTTTGTTGATTTGAGTTGAC 12242791 12242815 AGAAACAGCAACACAATTAGTAGC 12242879 12242856 NA T [NA]; TCTATATTTTCTG [NA] NA InD-MF: TAACATTTTGTTGATTTGAGTTGAC InD-MR: AGAAACAGCAACACAATTAGTAGC 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004881.1 t4182 InD-N 1 Others t4182.G001 S_indicum_v1.0 NC_026153.1 TGTGTAATACATAGGCTGCTCGT 5988046 5988068 TCGGACCAAGTTTCAAACTAGAA 5988173 5988151 NA A [NA]; ATCTGTTCC [NA] NA InD-NF: TGTGTAATACATAGGCTGCTCGT InD-NR: TCGGACCAAGTTTCAAACTAGAA 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004882.1 t4182 InD-O 1 Others t4182.G001 S_indicum_v1.0 NC_026145.1 CCACACTTCCAGTCGTGCT 14656711 14656729 CAGCATCTGAAGCATTGGTAA 14656820 14656800 NA A [NA]; AAATGAAT [NA] NA InD-OF: CCACACTTCCAGTCGTGCT InD-OR: CAGCATCTGAAGCATTGGTAA 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.M004883.1 t4182 InD-P 1 Others t4182.G001 S_indicum_v1.0 NC_026148.1 GATTTTGTGGTGAATACTATCCTTT 11443542 11443566 CAGAACCTAAGCAAGTATTTAGTTG 11443641 11443617 NA T [NA]; TATGGATGA [NA] NA InD-PF: CAGAACCTAAGCAAGTATTTAGTTG InD-PR: GATTTTGTGGTGAATACTATCCTTT 10.1007/s11032-014-0174-4 NA 1 S_indicum_v1.0 t4182.P0000001 t4182 RPI-B3 1 other t4182.G001 S_indicum_v1.0 NA AAGCGACCTG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000002 t4182 RPI-B4 1 other t4182.G001 S_indicum_v1.0 NA AATCGCGCTG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000003 t4182 RPI-B5 1 other t4182.G001 S_indicum_v1.0 NA AATCGGGCTG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000004 t4182 RPI-B7 1 other t4182.G001 S_indicum_v1.0 NA ACATCGCCCA 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000005 t4182 RPI-B8 1 other t4182.G001 S_indicum_v1.0 NA ACCACCCACC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000006 t4182 RPI-B9 1 other t4182.G001 S_indicum_v1.0 NA ACCGCCTATG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000007 t4182 RPI-B10 1 other t4182.G001 S_indicum_v1.0 NA ACGATGAGCG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000008 t4182 RPI-B11 1 other t4182.G001 S_indicum_v1.0 NA ACGGAAGTGG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000009 t4182 RPI-B12 1 other t4182.G001 S_indicum_v1.0 NA ACGGCAACCT 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000010 t4182 RPI-B13 1 other t4182.G001 S_indicum_v1.0 NA ACGGCAAGGA 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000011 t4182 RPI-B14 1 other t4182.G001 S_indicum_v1.0 NA ACTTCGCCAC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000012 t4182 RPI-B15 1 other t4182.G001 S_indicum_v1.0 NA AGCCTGAGCC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000013 t4182 RPI-B16 1 other t4182.G001 S_indicum_v1.0 NA AGGCGGCAAG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000014 t4182 RPI-B17 1 other t4182.G001 S_indicum_v1.0 NA AGGCGGGAAC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000015 t4182 RPI-B18 1 other t4182.G001 S_indicum_v1.0 NA AGGCTGTGTC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000016 t4182 RPI-B19 1 other t4182.G001 S_indicum_v1.0 NA AGGTGACCGT 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000017 t4182 RPI-B20 1 other t4182.G001 S_indicum_v1.0 NA AGTCCGCCTC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000018 t4182 RPI-B21 1 other t4182.G001 S_indicum_v1.0 NA CACGAACCTC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000019 t4182 RPI-B22 1 other t4182.G001 S_indicum_v1.0 NA CATAGAGCGG 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000020 t4182 RPI-B23 1 other t4182.G001 S_indicum_v1.0 NA CCAGCAGCTA 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000021 t4182 RPI-B24 1 other t4182.G001 S_indicum_v1.0 NA CCAGCCGAAC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P0000022 t4182 RPI-B25 1 other t4182.G001 S_indicum_v1.0 NA GAGCGCCTTC 0 0 NA 0 0 NA NA 0 0 NA NA RAPD 10.1007/s13205-016-0578-4 28391476 1 S_indicum_v1.0 t4182.P000511.1 t4182 HSDt06-F_ HSDt06-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TATTTAACTCCAAAACGTAGTACAT 591220 591244 CATGCTTTACAATTCTATTATTGTT 591365 591341 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000512.1 t4182 HSDt05-F_ HSDt05-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TATTATTGCCGTTCTTATTGTTTTT 603385 603409 CGTCATTTTTTTGGTTATATTTCTA 603483 603459 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000513.1 t4182 HSDt04-F_ HSDt04-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TGGATAAGCATACACACACCAACAT 620781 620805 AACTTGCTGCAGAGGGACTCG 620907 620887 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000514.1 t4182 HSDt03-F_ HSDt03-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 AATCAATTGGTAAGGATGGTATCA 646131 646154 TTATTCGTCACTTACAGATTATCCA 646323 646299 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000515.1 t4182 HSDt02-F_ HSDt02-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 GCCGCAATTTAATTTCTTTCA 649232 649252 GACTAGAGACTCCCCACACTTAGAT 649397 649373 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000516.1 t4182 HSDt15-F_ HSDt15-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TTTTTAGCCGTATTCCGAGACTAT 672902 672925 ATGGCTCTATCTACCAAAATCTAAT 673088 673064 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000517.1 t4182 SiDt F_ SiDt R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 CTAGCGCCTTCTAGCAGCAGTC 649613 649634 ATGGCAAAAATGTCATCGGACC 651421 651400 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000518.1 t4182 Border2-F_ Border2-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TCAATGTTTGCCTCAATGCT 629466 629485 GACTCCGAATAAGTACATGAAAGG 630427 630404 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000519.1 t4182 Border3-F_ Border3-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 GTGGAGTTATGATGGGTTGC 634587 634606 TCGTCACAAACTACAACCGC 635237 635218 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000520.1 t4182 Border4-F_ Border4-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 TACCTCAACTCCGTCATCCT 640492 640511 CATTCGCCCTGTGCTTCCTG 641935 641916 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000521.1 t4182 Border5-F_ Border5-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 ACTGTGCTGTGCTTTGCTTT 648042 648061 ATTATGGACTATTTTGCCCC 648733 648714 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000522.1 t4182 Border6-F_ Border6-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 CGATGTTGAAATAGAAGACG 650294 650313 ATCATTTCTCCTCCACCGTC 651363 651344 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000523.1 t4182 Border7-F_ Border7-R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 CCACAACTTCTCAACGACCAT 654403 654423 TCACTCAGCCTGATCCTTGC 656059 656040 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000524.1 t4182 SiDt-RT F_ SiDt-RT R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026153.1 GTGCCCTCACGCATCCTAAT 649729 649748 CCTTCCACAGTCACCTCTAAACC 651286 651264 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P000525.1 t4182 SiTub F_ SiTub R 1 SNP/InDel t4182.G001 GCF_000512975.1_S_indicum_v1.0_genomic NC_026156.1 TGACAGCGAGTTTCCTGAGATC 5616160 5616181 TGGTGACCTCAACCACCTCAT 5616260 5616240 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009929 t4182 HSDt14- F_HSDt14-1R 1 other t4182.G001 S_indicum_v1.0 NA GTGGTGAGGGTGGCGAA 0 0 CTTAATTTTTTAATAATATCCATAAGAA 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009930 t4182 HSDt14- F_HSDt14-2R 1 other t4182.G001 S_indicum_v1.0 NA GTGGTGAGGGTGGCGAA 0 0 TATCTCTTAATTTTTTAATAATATCCATAAGAC 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009931 t4182 HSDt13-1F_HSDt13-R 1 other t4182.G001 S_indicum_v1.0 NA AAAAAATGCAATTTACTCTCTTCTG 0 0 TTAGATAGGGGAATTTACTTTTTTT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009932 t4182 HSDt13-2F_HSDt13-R 1 other t4182.G001 S_indicum_v1.0 NA TATACAAAAAATGCAATTTACTCTCTTCTA 0 0 TTAGATAGGGGAATTTACTTTTTTT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009933 t4182 HSDt12-F_HSDt12-1R 1 other t4182.G001 S_indicum_v1.0 NA ATATTGTATTTTCATCGTTTCAAGC 0 0 TTTACTAAATGGCTTTTTTCTTACT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009934 t4182 HSDt12-F_HSDt12-2R 1 other t4182.G001 S_indicum_v1.0 NA ATATTGTATTTTCATCGTTTCAAGC 0 0 ATACTTTTACTAAATGGCTTTTTTCTTACC 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009935 t4182 HSDt11-F_HSDt11-1R 1 other t4182.G001 S_indicum_v1.0 NA GTTTCTTTCTTCTTTTTAGATCATT 0 0 TAAAAAAATATGATGTGTTAATATT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009936 t4182 HSDt11-F_HSDt11-2R 1 other t4182.G001 S_indicum_v1.0 NA GTTTCTTTCTTCTTTTTAGATCATT 0 0 ATATGTAAAAAAATATGATGTGTTAATATA 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009937 t4182 HSDt10-1F_HSDt10-R 1 other t4182.G001 S_indicum_v1.0 NA TTACATTCAAAATTCATCATATTTT 0 0 TTACAAAAAAGTATCAAAACTTATT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009938 t4182 HSDt10-2F_HSDt10-R 1 other t4182.G001 S_indicum_v1.0 NA TATCTTTACATTCAAAATTCATCATATTTA 0 0 TTACAAAAAAGTATCAAAACTTATT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009939 t4182 HSDt09-1F_HSDt09-R 1 other t4182.G001 S_indicum_v1.0 NA AGTGAGCTGACAAAGCTCGGC 0 0 TCCCATAATGTTTCGTGTTTCT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009940 t4182 HSDt09-2F_HSDt09-R 1 other t4182.G001 S_indicum_v1.0 NA ATACTAGTGAGCTGACAAAGCTCGGC 0 0 TCCCATAATGTTTCGTGTTTCT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009941 t4182 HSDt08-1F_HSDt08-R 1 other t4182.G001 S_indicum_v1.0 NA CAATATCACAGGAGGATTGCTGAC 0 0 CAACCTATACACACATGAATGCAGT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009942 t4182 HSDt08-2F_HSDt08-R 1 other t4182.G001 S_indicum_v1.0 NA TACTTCAATATCACAGGAGGATTGCTGAC 0 0 CAACCTATACACACATGAATGCAGT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009943 t4182 HSDt07-1F_HSDt07-R 1 other t4182.G001 S_indicum_v1.0 NA CATGTTATCTTTTGATGGCTACAC 0 0 TTAATTATAAAATAGCTCATGCAAC 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009944 t4182 HSDt07-2F_HSDt07-R 1 other t4182.G001 S_indicum_v1.0 NA TTGTACATGTTATCTTTTGATGGCTACAC 0 0 TTAATTATAAAATAGCTCATGCAAC 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009945 t4182 HSDt06-F_ HSDt06-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TATTTAACTCCAAAACGTAGTACAT 591220 591244 CATGCTTTACAATTCTATTATTGTT 591365 591341 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009946 t4182 HSDt05-F_ HSDt05-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TATTATTGCCGTTCTTATTGTTTTT 603385 603409 CGTCATTTTTTTGGTTATATTTCTA 603483 603459 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009947 t4182 HSDt04-F_ HSDt04-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TGGATAAGCATACACACACCAACAT 620781 620805 AACTTGCTGCAGAGGGACTCG 620907 620887 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009948 t4182 HSDt03-F_ HSDt03-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 AATCAATTGGTAAGGATGGTATCA 646131 646154 TTATTCGTCACTTACAGATTATCCA 646323 646299 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009949 t4182 HSDt02-F_ HSDt02-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 GCCGCAATTTAATTTCTTTCA 649232 649252 GACTAGAGACTCCCCACACTTAGAT 649397 649373 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009950 t4182 HSDt01-1F_HSDt01-R 1 other t4182.G001 S_indicum_v1.0 NA CCTGATGTTCCTGGTCCGAA 0 0 TAAATCAATCAGGTCTTAAGCAGT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009951 t4182 HSDt01-2F_HSDt01-R 1 other t4182.G001 S_indicum_v1.0 NA CTATTCCTGATGTTCCTGGTCCGAG 0 0 TAAATCAATCAGGTCTTAAGCAGT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009952 t4182 HSDt15-F_ HSDt15-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TTTTTAGCCGTATTCCGAGACTAT 672902 672925 ATGGCTCTATCTACCAAAATCTAAT 673088 673064 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009953 t4182 HSDt16-1F_HSDt16-R 1 other t4182.G001 S_indicum_v1.0 NA AAATAACAAAGGTGTAAATCATTCC 0 0 AGTAGTCGCCATAAACTATAACTCA 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009954 t4182 HSDt16-2F_HSDt16-R 1 other t4182.G001 S_indicum_v1.0 NA AATATAAATAACAAAGGTGTAAATCATTCT 0 0 AGTAGTCGCCATAAACTATAACTCA 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009955 t4182 SiDt F_ SiDt R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 CTAGCGCCTTCTAGCAGCAGTC 649613 649634 ATGGCAAAAATGTCATCGGACC 651421 651400 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009956 t4182 Border1-F_ Border1-R 1 other t4182.G001 S_indicum_v1.0 NA ATTTTTTATGCTGCGAAGTTATCAA 0 0 CACGCTTAGAATGTTTGTCAATGTT 0 0 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009957 t4182 Border2-F_ Border2-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TCAATGTTTGCCTCAATGCT 629466 629485 GACTCCGAATAAGTACATGAAAGG 630427 630404 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009958 t4182 Border3-F_ Border3-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 GTGGAGTTATGATGGGTTGC 634587 634606 TCGTCACAAACTACAACCGC 635237 635218 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009959 t4182 Border4-F_ Border4-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 TACCTCAACTCCGTCATCCT 640492 640511 CATTCGCCCTGTGCTTCCTG 641935 641916 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009960 t4182 Border5-F_ Border5-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 ACTGTGCTGTGCTTTGCTTT 648042 648061 ATTATGGACTATTTTGCCCC 648733 648714 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009961 t4182 Border6-F_ Border6-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 CGATGTTGAAATAGAAGACG 650294 650313 ATCATTTCTCCTCCACCGTC 651363 651344 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009962 t4182 Border7-F_ Border7-R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 CCACAACTTCTCAACGACCAT 654403 654423 TCACTCAGCCTGATCCTTGC 656059 656040 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009963 t4182 SiDt-RT F_ SiDt-RT R 1 other t4182.G001 S_indicum_v1.0 NC_026153.1 GTGCCCTCACGCATCCTAAT 649729 649748 CCTTCCACAGTCACCTCTAAACC 651286 651264 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0 t4182.P0009964 t4182 SiTub F_ SiTub R 1 other t4182.G001 S_indicum_v1.0 NC_026156.1 TGACAGCGAGTTTCCTGAGATC 5616160 5616181 TGGTGACCTCAACCACCTCAT 5616260 5616240 NA NA 0 0 NA NA SNP/InDel 10.1038/srep31556 27527492 1 S_indicum_v1.0