marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t4081.M021273.1 t4081 TG301 1 CAPS t4081.G001 SL3.0 SL3.0ch01 AGAGCTCAGGATGAACAGAACACGAA 843782 843807 TTCTGCCAATTTCTTTGACCAACC 844614 844591 NA NA HpyCH4IV 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021305.1 t4081 TG118 1 CAPS t4081.G001 SL3.0 SL3.0ch06 GATATGGAAGTAGATGTGTC 36157038 36157057 TACTGTCCATCCCTCATT 36157638 36157621 NA 330+271 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 330+271 [Solanum lycopersicum FL8000]; 601 [Solanum pennellii LA716] SalI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021306.1 t4081 TG224 1 CAPS t4081.G001 SL3.0 SL3.0ch01 GTATACTCAACAGAGCTTCAGAC 84202147 84202169 GTGTAGATACCTGCACTCTCAG 84202659 84202638 NA NA HaeIII 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021307.1 t4081 TG59 1 CAPS t4081.G001 SL3.0 SL3.0ch01 CTGAAGCTCACCTTGAGGTG 85073046 85073065 AACTCTACGCTGCACTGCTG 85073362 85073343 NA NA HaeII 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021308.1 t4081 TG460 1 CAPS t4081.G001 SL3.0 SL3.0ch01 CGAAATGTGACTATTCCAGAG 85968721 85968741 GTAATTTGCACTTCTTGCCT 85969170 85969151 NA NA AluI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021309.1 t4081 TG343 1 CAPS t4081.G001 SL3.0 SL3.0ch01 GAAACTTATATTTGTGCATCCAG 87387018 87387040 AAGTTGCCAATAGCCAAGTC 87387580 87387561 NA NA Hpy188I 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021310.1 t4081 CT140 1 CAPS t4081.G001 SL3.0 SL3.0ch02 TCACTCGGGCTAAAATCTTC 37127590 37127609 GGGCTCAAAAGTTAACTCCA 37128186 37128167 NA NA DdeI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021311.1 t4081 T1706 1 CAPS t4081.G001 SL3.0 SL3.0ch02 ATCTTGAACCAGGAGCCTTC 37782350 37782369 AGTATCTAGAGTAGTAGTTCTCAC 37782681 37782658 NA NA AluI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021314.1 t4081 TG145 1 CAPS t4081.G001 SL3.0 SL3.0ch02 TTCATTTGCTGGACAGGCAGTC 41093769 41093790 TGTCATCAAACGACCAGAGAC 41094575 41094555 NA NA HpyCH4IV 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021316.1 t4081 TG537 1 CAPS t4081.G001 SL3.0 SL3.0ch02 TACCCGAGGCTCAGAAACAC 51681005 51681024 CATCAACAGGAGATCGGTTTT 51681449 51681429 NA NA HinfI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021317.1 t4081 TG91 1 CAPS t4081.G001 SL3.0 SL3.0ch02 CGGTCTCAGTTGCAACTCAA 52784925 52784944 TGCAGAGCTGTAATATTTAGAC 52785289 52785268 NA NA DraI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021318.1 t4081 TG620 1 CAPS t4081.G001 SL3.0 SL3.0ch02 TTTTACCTGGCGGAGAACTG 55053515 55053534 CTCTGTGCCAGAGCTCGAA 55053916 55053898 NA NA EcoRI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021319.1 t4081 TG42 1 CAPS t4081.G001 SL3.0 SL3.0ch03 TAGAACTTGGCATCCCTTGAAG 65787139 65787160 TTCCTCACTGCTTGGACCAGC 65787676 65787656 NA NA MnlI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021321.1 t4081 TG609 1 CAPS t4081.G001 SL3.0 SL3.0ch04 TTGCCTACTTATAACCCTGTGGA 7790575 7790597 ATATGACTAGGAGGCAATGACTGA 7790954 7790931 NA NA AluI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021323.1 t4081 TG272 1 CAPS t4081.G001 SL3.0 SL3.0ch00 GATTTTGCCCCCTCTACCA 7876979 7876997 ACATCTTTTCCTTCCCTCTGC 7877330 7877310 NA NA MnlI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021324.1 t4081 TG62 1 CAPS t4081.G001 SL3.0 SL3.0ch04 TTCAGCAGCAAGCAAAGATG 60213288 60213307 CATGCCTAGTTGCAGTGTCC 60213709 60213690 NA NA DdeI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021326.1 t4081 TG555 1 CAPS t4081.G001 SL3.0 SL3.0ch04 AATTCGGAGCTCACTGCTTC 61951619 61951638 AGTACGGCATGCTTGCTATC 61952092 61952073 NA NA HpyCH4IV 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021327.1 t4081 CT50 1 CAPS t4081.G001 SL3.0 SL3.0ch04 GACGGCGTATTACGTTCAGA 63500502 63500521 CTAGCACCCCAAAGGATGAG 63500900 63500881 NA NA DdeI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021329.1 t4081 TG441 1 CAPS t4081.G001 SL3.0 SL3.0ch05 TGTCAGCATAGGCTTTTCCA 1948445 1948464 CGGTCGGGAAAAATGACA 1948859 1948842 NA NA RsaI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021330.1 t4081 CD31 1 CAPS t4081.G001 SL3.0 SL3.0ch05 ATCTCGGGATCATGGTTGAC 5762629 5762648 ATGGCCAGAGAAATTCCAAA 5763436 5763417 NA NA HinfI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021332.1 t4081 CT138 1 CAPS t4081.G001 SL3.0 SL3.0ch05 GCGGTCAACTTCAGCAACTAT 66675485 66675505 ACCAGCCCCGGAAGATTTTA 66676363 66676344 NA NA RsaI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021336.1 t4081 CT92 1 CAPS t4081.G001 SL3.0 SL3.0ch08 CTCACTATCCAACTTACTGAGC 53292514 53292535 TGTAGTTGTATTACTAACACAGC 53293196 53293174 NA NA NA 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021337.1 t4081 CT64 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GAGGAGAGATTCTTGGAC 60551154 60551171 TGAGGTTGATAGTGGGTG 60551438 60551421 NA NA HaeIII 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021339.1 t4081 TG294 1 CAPS t4081.G001 SL3.0 SL3.0ch08 ATTGGCTGCAATGATGGATT 65868192 65868211 CTAAGCAGGACGGCCATCTA 65869092 65869073 NA NA MnlI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021340.1 t4081 CT240 1 CAPS t4081.G001 SL3.0 SL3.0ch10 ATCCCAAGTACCCTCGCATTAGT 65318483 65318505 AGCCTTCTTTGTCCCATCAG 65319272 65319253 NA NA HaeIII 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021343.1 t4081 CT19 1 CAPS t4081.G001 SL3.0 SL3.0ch12 CATGCAAGCAAGGTCCACAAC 497121 497141 GAATCAGCAATCCGTAAT 497370 497353 NA NA NlaIII 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021344.1 t4081 TG68 1 CAPS t4081.G001 SL3.0 SL3.0ch12 TTTTGAATCCCCTTTTACCAT 1175541 1175561 TTTGATTACACCTGCCTTTACATA 1175967 1175944 NA NA DdeI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021345.1 t4081 TG565 1 CAPS t4081.G001 SL3.0 SL3.0ch12 TCTGCGAGGTAGGGGTAAG 60286354 60286372 CTGCAAAACAAGAATCACACT 60286727 60286707 NA NA MnlI 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021346.1 t4081 TG296 1 CAPS t4081.G001 SL3.0 SL3.0ch12 TGCTAAAACGGACCTACAA 66059876 66059894 TGTTCTGTCGGCATAAAGT 66060248 66060230 NA NA HpyCH4IV 10.1007/s00122-006-0458-0 17136515 1 SL3.00 t4081.M021348.1 t4081 TG549 1 CAPS t4081.G001 SL3.0 SL3.0ch03 TTCTTAGAGCCCACCAGCAC 71554422 71554441 ATGGAGAGAAGCTGGAACAC 71554830 71554811 NA NA MseI 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021350.1 t4081 T0707 1 CAPS t4081.G001 SL3.0 SL3.0ch04 TCGTGGATTATGGGCTTCTT 2594161 2594180 GGTAAGGCTGCAACACATCA 2594618 2594599 NA NA DdeI 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021351.1 t4081 TG339 1 CAPS t4081.G001 SL3.0 SL3.0ch04 GAAACCTTACCCCTCTA 4428479 4428495 CGCTGTTTCTTGCCATTT 4428914 4428897 NA NA HinfI 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021352.1 t4081 TG272 1 CAPS t4081.G001 SL3.0 SL3.0ch00 GATTTTGCCCCCTCTACCA 7876979 7876997 ACATCTTTTCCTTCCCTCTGC 7877330 7877310 NA NA HinfI 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021353.1 t4081 TG264 1 CAPS t4081.G001 SL3.0 SL3.0ch04 TGGCTAACTGACGAAGACGA 59819298 59819317 GGAACAGGTCAGGACAGCAT 59819742 59819723 NA NA MnlI 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021354.1 t4081 TG555 1 CAPS t4081.G001 SL3.0 SL3.0ch04 AATTCGGAGCTCACTGCTTC 61951619 61951638 AGTACGGCATGCTTGCTATC 61952092 61952073 NA NA HpyCH4IV 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021355.1 t4081 TG10 1 CAPS t4081.G001 SL3.0 SL3.0ch09 ATGATATCCACACCCCTGGA 2888432 2888451 ATGCCTCGAAATTCAAATGC 2889030 2889011 NA NA HaeIII 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021357.1 t4081 TG551 1 CAPS t4081.G001 SL3.0 SL3.0ch09 CAACGAAAACCTTGGCACTC 66583192 66583211 GAGATGAGCAGCATATGGAG 66583504 66583485 NA NA HpyCH4IV 10.1007/s10681-007-9460-0 NA 1 SL3.00 t4081.M021364.1 t4081 TG128 1 CAPS t4081.G001 SL3.0 SL3.0ch07 ACTAATCTGCTGTAGTGCATGAGTC 62688853 62688877 TGGGTACTAGCTGATTTATCCACTC 62689295 62689271 NA 243+196 [Fla. 7547]; 243+196 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 243+196 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 243+196 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 439 [Solanum esculentum cv. M82] BclI 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021365.1 t4081 TG190 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GCAGTACACTTCTCCTTATCATGTG 62340259 62340283 AGTTTCAGTAGTTGTTCCAAATTCC 62341057 62341033 NA 598+175 [Fla. 7547]; 598+175 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 598+175 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 598+175 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 773 [Solanum esculentum cv. M82] HhaI 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021368.1 t4081 CT84 1 CAPS t4081.G001 SL3.0 SL3.0ch07 ACGGTAGCACAGAGGAAAAGTG 62754776 62754797 GGTGGACTTCATTGCTGATTACTAC 62755450 62755426 NA 500+200 [Fla. 7547]; 500+200 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 500+200 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 500+200 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 500+300+200 [Solanum esculentum cv. M82] ApoI 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021369.1 t4081 CT226 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GGAATGAACAATTTATATGCAGCAG 63616072 63616096 GTGAAGGAGTGTCAAAGGCAAC 63616478 63616457 NA 401 [Fla. 7547]; 401 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 401 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 401 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 287+114 [Solanum esculentum cv. M82] NA 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021371.1 t4081 RGA332 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CGATTCGTTTGAAGGAGCTAA 63720473 63720493 TTGTTTAAAAAGTCGTAAGCTTTCAT 63720719 63720694 NA 124+87+19+17 [Fla. 7547]; 124+87+19+17 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 124+87+19+17 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 124+87+19+17 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 221+19+17 [Solanum esculentum cv. M82] AluI 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021372.1 t4081 pTOM13 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CCATGGCCCATAAGCCATC 59957916 59957934 GCAAGAAGAAAGTGCTTTCCC 59958807 59958787 NA 518+174 [Fla. 7547]; 892 [Fla. 7547]; 892 [IL7-2 (introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 892 [IL7-3(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 892 [IL7-4(introgression line of the S. pennellii LA716 genome in an S. esculentum cv. M82 background)]; 518+174 [Solanum esculentum cv. M82] DraI 10.1007/s00122-004-1646-4 15045176 1 SL3.00 t4081.M021374.1 t4081 CT83 1 CAPS t4081.G001 SL3.0 SL3.0ch06 CGAGGCTTCCTCTCTGATG 37375426 37375444 GACTGCAGAGGTTAACTGAC 37375822 37375803 NA 397 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 240+157 [Solanum lycopersicum FL8000]; 397 [Solanum pennellii LA716] ApoI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021375.1 t4081 C2_At1g21640 1 CAPS t4081.G001 SL3.0 SL3.0ch06 AGAAAAGTCATCCATGGAAACAACAC 38090867 38090892 TGGCCACAATGACACCATCACCTTG 38091276 38091252 NA 410 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 290+120 [Solanum lycopersicum FL8000]; 410 [Solanum pennellii LA716] ApoI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021376.1 t4081 J350 1 CAPS t4081.G001 SL3.0 SL3.0ch06 CTGCTGGAATTGTAATTATTCACG 38763158 38763181 TTGAGCATAAACAGTCCAAAACAT 38763459 38763436 NA 159/143 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 302 [Solanum lycopersicum FL8000]; 159/143 [Solanum pennellii LA716] HinfI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021379.1 t4081 J352 1 CAPS t4081.G001 SL3.0 SL3.0ch06 AAAATTGGAGGGACAACAAATAAA 38967965 38967988 AAGGAAGTTCAAGAGCTAAGGTCA 38968379 38968356 NA 283+132 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 415 [Solanum lycopersicum FL8000]; 283+132 [Solanum pennellii LA716] HincII 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021380.1 t4081 J353 1 CAPS t4081.G001 SL3.0 SL3.0ch06 GAGAGAAAATGGGATAACCTTCAA 39086623 39086646 CACTTATTATCAGGAGGAGGAGGA 39086980 39086957 NA 358 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 268+90 [Solanum lycopersicum FL8000]; 358 [Solanum pennellii LA716] HinfI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021381.1 t4081 TG164 1 CAPS t4081.G001 SL3.0 SL3.0ch06 CCTGTAGGTTTCTTTGATTC 39997627 39997646 GGTATAGTTTCATGCACATC 39997869 39997850 NA 243 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 127+116 [Solanum lycopersicum FL8000]; 243 [Solanum pennellii LA716] ApoI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021382.1 t4081 J366 1 CAPS t4081.G001 SL3.0 SL3.0ch06 CTTCACTTCTTGCCTGAGATGTTA 40403437 40403460 AGATCAATTACCGATATCACCCAT 40403891 40403868 NA 455 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 360+95 [Solanum lycopersicum FL8000]; 455 [Solanum pennellii LA716] HinfI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021383.1 t4081 TG352 1 CAPS t4081.G001 SL3.0 SL3.0ch06 CATATGTCCTGCTAAAAGAAG 40564600 40564620 GAGGGATGTCTCATGTAG 40564825 40564808 NA 226 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 149+77 [Solanum lycopersicum FL8000]; 226 [Solanum pennellii LA716] Tsp509I 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021384.1 t4081 J385 1 CAPS t4081.G001 SL3.0 SL3.0ch06 GGCAAGTGAAGGTGTAAAAGTTCT 42316502 42316525 GTTCAAAATTAAACAGAACGTCCC 42316992 42316969 NA 237+151+103 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 340+151 [Solanum lycopersicum FL8000]; 237+151+103 [Solanum pennellii LA716] HinfI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021385.1 t4081 CT204 1 CAPS t4081.G001 SL3.0 SL3.0ch06 TCCCTCCTCAGATTTAGCTT 43561305 43561324 TTGGTGCCCTCTTCTTTTT 43561686 43561668 NA 196+186 [RXopJ4 8000 OC7 (a resistant outcross line from crosses between various commercial tomato lines (S. lycopersicum) and S. pennellii LA716)]; 382 [Solanum lycopersicum FL8000]; 196+186 [Solanum pennellii LA716] BamHI 10.1007/s00122-012-2004-6 23117718 1 SL3.00 t4081.M021527.1 t4081 U38666 1 CAPS t4081.G001 SL3.0 SL3.0ch09 actcatgttcacgccactttctta 67563411 67563434 agctgccgtgtcctgtatca 67564003 67563984 NA NA DraI, HinfI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021528.1 t4081 tg254 1 CAPS t4081.G001 SL3.0 SL3.0ch09 ttgggaatatagtgtaggaag 834647 834667 ctggaaaggggaaagac 835020 835004 NA NA FokI, Sau3AI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021609.1 t4081 GOT-A 1 CAPS t4081.G001 SL3.0 SL3.0ch08 AGGATAAAGAGTGTGAGACAGAAGC 25479287 25479311 AGAAATTGTCAAAATCTGCTTCATAC 25480010 25479985 NA 580+170 bp [Solanum esculentum cv. M82]; 580+174 bp [Solanum pennellii LA716] DraI 10.1007/s11032-006-9037-y NA 1 SL3.00 t4081.M021611.1 t4081 Ve2 1 CAPS t4081.G001 SL3.0 SL3.0ch09 TAGGAGGAAAAGAATTGG 48692 48709 CAAACATAGCTGGAAGAATC 49695 49676 NA C (428+601) [Solanum lycopersicum ISPORT L13.3/3]; G (undigested) [Solanum lycopersicum L98A]; C (428+601) [Solanum lycopersicum Mogeor] HincII V2LeO3F: CAAACATAGCTGGAAGAATC V2LeO3R: TAGGAGGAAAAGAATTGG 10.1111/j.1439-0523.2007.01398.x NA 1 SL3.00 t4081.M021613.1 t4081 ct41 1 CAPS t4081.G001 SL3.0 SL3.0ch10 ttgcggaatacactgagaa 1127661 1127679 caaaaatgcaatgaaaaa 1128113 1128096 NA NA HinfI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021615.1 t4081 ct217 1 CAPS t4081.G001 SL3.0 SL3.0ch10 gacgagaacggggatggatt 58435578 58435597 gatacaaagatggcacaaaacagc 58435878 58435855 NA NA BccI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021616.1 t4081 ct203 1 CAPS t4081.G001 SL3.0 SL3.0ch10 gagaggaagcgtaatagg 60528721 60528738 tagaatatgggaagcgaaatg 60529121 60529101 NA NA HaeIII, MboII 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021617.1 t4081 ct20 1 CAPS t4081.G001 SL3.0 SL3.0ch10 atcccccaagctaaacatcaaact 62345169 62345192 gaagccggagccgaggagacag 62345513 62345492 NA NA NA 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021618.1 t4081 ct240 1 CAPS t4081.G001 SL3.0 SL3.0ch10 atcccaagtaccctcgcattagt 65318483 65318505 agccttctttgtcccatcag 65319272 65319253 NA NA HaeIII 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021620.1 t4081 ct113 1 CAPS t4081.G001 SL3.0 SL3.0ch07 agctcgaggatggccgcacttt 66537839 66537860 acaacgggcaacagacgcaacc 66538190 66538169 NA NA MboI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021622.1 t4081 tg651 1 CAPS t4081.G001 SL3.0 SL3.0ch11 tgcaaaaatggcggaaaat 2267146 2267164 taccccaaacataaataatc 2267370 2267351 NA NA NA 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021623.1 t4081 tg523 1 CAPS t4081.G001 SL3.0 SL3.0ch11 ctactacttcacttcctggtcat 3707376 3707398 atttcctggattcgttttct 3707717 3707698 NA NA MboII, MnlI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021624.1 t4081 tg47 1 CAPS t4081.G001 SL3.0 SL3.0ch11 tcccactccaagctatactaacaa 32840862 32840885 cctcattgggcggtcatt 32841276 32841259 NA NA BglII, MseI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021625.1 t4081 ct55 1 CAPS t4081.G001 SL3.0 SL3.0ch11 catctggtgaggcggtgaagta 49296500 49296521 tccgcccaaacaaaacagtaata 49296903 49296881 NA NA AluI, DdeI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021627.1 t4081 ct19 1 CAPS t4081.G001 SL3.0 SL3.0ch12 catgcaagcaaggtccacaac 497121 497141 gaatcagcaatccgtaat 497370 497353 NA NA DraI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021628.1 t4081 tg68 1 CAPS t4081.G001 SL3.0 SL3.0ch12 ttttgaatccccttttaccat 1175541 1175561 tttgattacacctgcctttacata 1175967 1175944 NA NA MboI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021629.1 t4081 ct79 1 CAPS t4081.G001 SL3.0 SL3.0ch12 caacaacaaattcccctctc 1974553 1974572 ttgtggtgtttgctgatgat 1974717 1974698 NA NA NA 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021631.1 t4081 ct99 1 CAPS t4081.G001 SL3.0 SL3.0ch12 atctaaaaacacgccaataatct 4705091 4705113 ggaccatcggagggagcac 4705399 4705381 NA NA HinfI, RsaI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021632.1 t4081 tg394 1 CAPS t4081.G001 SL3.0 SL3.0ch12 agcctcatgagacctacaa 62851550 62851568 tacagcacaatcttctacc 62851871 62851853 NA NA FokI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021633.1 t4081 tg565 1 CAPS t4081.G001 SL3.0 SL3.0ch12 tctgcgaggtaggggtaag 60286354 60286372 ctgcaaaacaagaatcacact 60286727 60286707 NA NA MboI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021634.1 t4081 ct106 1 CAPS t4081.G001 SL3.0 SL3.0ch04 caggcgctcattggacatt 62078149 62078167 tggcgaggatcacacttg 62078526 62078509 NA NA NA 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021635.1 t4081 ct287 1 CAPS t4081.G001 SL3.0 SL3.0ch08 ctggcggtgaagaagtgtc 58867501 58867519 ggaagacaaccatttatttat 58867717 58867697 NA NA ClaI, MboII 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021636.1 t4081 ct239 1 CAPS t4081.G001 SL3.0 SL3.0ch04 gaatgccatcagggaaaggtaact 66005502 66005525 tggaacggagtacaaaacagaaga 66006322 66006300 NA NA HinfI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021637.1 t4081 tg296 1 CAPS t4081.G001 SL3.0 SL3.0ch12 tgctaaaacggacctacaa 66059876 66059894 tgttctgtcggcataaagt 66060248 66060230 NA NA AccI, MboI 10.1023/B:MOLB.0000022535.82602.79 NA 1 SL3.00 t4081.M021757.1 t4081 H3L 1 CAPS t4081.G001 SL3.0 SL3.0ch12 CACATATCGCCAAGCTTCCTC 165927 165947 GAGCACGAGGATTTGTAGTATTGG 166422 166399 NA 400 [NA]; 500 [NA] HaeIII 10.1007/s00438-005-1149-2 16021467 1 SL3.00 t4081.M021770.1 t4081 P13L 1 CAPS t4081.G001 SL3.0 SL3.0ch12 TGCTCCATCTTTTTATTGCC 552121 552140 CTCTCTCCCTCCTTAATAGGC 552988 552968 NA 700 [NA]; 900 [NA] RsaI 10.1007/s00438-005-1149-2 16021467 1 SL3.00 t4081.M021777.1 t4081 I2R 1 CAPS t4081.G001 SL3.0 SL3.0ch12 AACAGATAGTGAGGAACG 714370 714387 GGAAATGAGTTTACTCGG 715202 715185 NA 600 [NA]; 800 [NA] NlaIV 10.1007/s00438-005-1149-2 16021467 1 SL3.00 t4081.M021815.1 t4081 GOT-B 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CCAAGTAACCAACATTTCCAGTAG 63447892 63447915 AGTGGCAGTGAAAAGTCAGTTG 63448560 63448539 NA 440+210 bp [Solanum esculentum cv. M82]; 650 bp [Solanum pennellii LA716] HpaII 10.1007/s11032-006-9037-y NA 1 SL3.00 t4081.M021821.1 t4081 GOT-F 1 CAPS t4081.G001 SL3.0 SL3.0ch08 ATTTTTGTGTGGTTTCCCC 57496437 57496455 TCACTGGGTTGGCAGACTTC 57497374 57497355 NA 530+410 bp [Solanum esculentum cv. M82]; 940 bp [Solanum pennellii LA716] NdeI 10.1007/s11032-006-9037-y NA 1 SL3.00 t4081.M021824.1 t4081 GOT-H_CAPS 1 CAPS t4081.G001 SL3.0 SL3.0ch08 CCAACTCCCAAGTTCAACTTC 57499259 57499279 ACTAAAATGCACACACAACAATCAC 57499970 57499946 NA 400+380 bp [Solanum esculentum cv. M82]; 390+390 bp [Solanum pennellii LA716] TaqI 10.1007/s11032-006-9037-y NA 1 SL3.00 t4081.M021847.1 t4081 11EP11 1 CAPS t4081.G001 SL3.0 SL3.0ch10 AATGCAGGACATTGTGTTGTG 57343731 57343751 TGACATGGCGTCCATTGTCTCC 57343875 57343856 NA NA HpaI, HpaII 10.1038/hdy.2013.45 23673388 1 SL3.00 t4081.M021848.1 t4081 11EP16 1 CAPS t4081.G001 SL3.0 SL3.0ch10 GACCCTTGGAACCAGCTACA 58071670 58071689 AGAGTCCATACACCACCACGCAAG 58071800 58071777 NA NA Cac8I 10.1038/hdy.2013.45 23673388 1 SL3.00 t4081.M021850.1 t4081 11EP186 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TGGAAGCTTTAAACTTGTCGTTCG 55338029 55338050 GCTCCAACTTCAATGCCTGT 55338169 55338150 NA NA Hpy188I 10.1038/hdy.2013.45 23673388 1 SL3.00 t4081.M021856.1 t4081 TG591 1 CAPS t4081.G001 SL3.0 SL3.0ch09 AGAGGTTGCAACTCGTGGATTGAG 71910972 71910995 AAGGCAAAGGAAGTTGGAGGTCA 71911750 71911730 NA NA AciI 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M021857.1 t4081 P31 1 CAPS t4081.G001 SL3.0 SL3.0ch09 TCTGCTTAGACCGACAAT 71810430 71810447 ATCCTACCTCATCCTCGT 71811024 71811007 NA NA HinfI 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M021863.1 t4081 NCTm-019 1 CAPS t4081.G001 SL3.0 SL3.0ch09 AATTTGGGCATACTGACATC 13619102 13619121 GTTGCACACATTGGTTGTAG 13619935 13619916 NA 600+270 [NC 1086, NC 10143]; 870 [NC 1086, NC 10143]; 870+600+200 [NC 1086, NC 10143]; 870 [NC514-1(2006), NC714]; 600+270 [Vendor VFT] HaeIII 10.1111/pbr.12076 NA 1 SL3.00 t4081.M021864.1 t4081 c2_At3g55120/TaqI 1 CAPS t4081.G001 SL3.0 SL3.0ch05 ATTCACTCGAGTGACTATGATCTTGCC 4467229 4467255 TATGGAATCCAGCACTGCTTCTGAC 4467698 4467674 NA NA TaqI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024721.1 t4081 Indel_4 1 CAPS t4081.G001 SL3.0 SL3.0ch09 ACAGATAGTTGAGTCGGTAT 71828950 71828969 ATTCGGATAGCCTACTGG 71829346 71829329 NA NA HpaII 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M024722.1 t4081 TG328 1 CAPS t4081.G001 SL3.0 SL3.0ch09 GGTGATCTGCTTATAGACTTGGG 71837236 71837258 AAGGTCTAAAGAAGGCTGGTGC 71837731 71837710 NA NA BstNI 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M024730.1 t4081 HBa0109D11_1 1 CAPS t4081.G001 SL3.0 SL3.0ch09 TCATCGCAGTAGAGGC 72537537 72537552 GACGGAAGACGGTGAT 72538124 72538109 NA NA TaqI 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M024734.1 t4081 T0156 1 CAPS t4081.G001 SL3.0 SL3.0ch09 GCGGTTGATTCACATCGTAA 71221396 71221413 CCTGTAGCACCCAAAGGATG 71222393 71222374 NA NA DpnII 10.1007/s00122-013-2162-1 23921955 1 SL3.00 t4081.M024743.1 t4081 CT226 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GGAATGAACAATTTATATGCAGCAG 63616072 63616096 GTGAAGGAGTGTCAAAGGCAAC 63616478 63616457 NA 114+287 [L. esculentum]; 401 [L. pennellii] NA 10.1071/AP06073 NA 1 SL3.00 t4081.M024751.1 t4081 FOS00169A13 (Ty-3-M4) 1 CAPS t4081.G001 SL3.0 SL3.0ch06 AGCTATCAGCTGCCAGAGACAT 34445565 34445586 CACCATCATTGTATCCAGAGAGC 34445983 34445961 NA NA MseI 10.1371/journal.pgen.1003399 23555305 1 SL3.00 t4081.M024752.1 t4081 MW3 1 CAPS t4081.G001 SL3.0 SL3.0ch01 GTTTCATGTGTAATAAAAATGATGC 1123360 1123384 TGAATCTTTGAATCAATCAGACG 1123856 1123834 NA 262+234 bp [cv. Moneymaker, Cf0 (not carrying Cf-4 and Cf-9 genes)]; 262+146 bp [cv. Moneymaker, Cf4 (carrying Cf-4 gene)]; 496 bp [cv. Moneymaker, Cf9 (carrying Cf-9 gene)] HincII 10.1534/genetics.167.1.459 15166169 1 SL3.00 t4081.M024758.1 t4081 TG598 1 CAPS t4081.G001 SL3.0 SL3.0ch05 TCTGCTTTGATTGGCTGTAGT 1935212 1935232 CCAGAAAGTTGGAGTAGTCTA 1936189 1936169 NA NA RsaI 10.1007/s004380100583 11810236 1 SL3.00 t4081.M024761.1 t4081 P11M6 1 CAPS t4081.G001 SL3.0 SL3.0ch05 GAGGTAGGACTTAGAAAACATA 2442192 2442213 AATCAACACCACTAAATGCAGA 2442879 2442858 NA NA NA 10.1007/s004380100583 11810236 1 SL3.00 t4081.M024771.1 t4081 Y45R 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CAGTAGACACGTCTTATAGTTAG 2337254 2337276 CTTGTGTAATTATTATTATTGTTGC 2337849 2337825 NA NA NA 10.1007/s004380100583 11810236 1 SL3.00 t4081.M024772.1 t4081 Y316R 1 CAPS t4081.G001 SL3.0 SL3.0ch05 GAATTCTAAGCTCTTTTCCCAATGC 2157637 2157661 TCCTTTTTCTATCTGAACTATCACCATC 2158018 2157991 NA NA NA 10.1007/s004380100583 11810236 1 SL3.00 t4081.M024773.1 t4081 P15M1(B) 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CTGAGAAACATATCCATGAATVTGAACTCTG 1974674 1974704 CACTCAAAATTNGAATGGTGTCATTTGTAAC 1974926 1974896 NA NA Tsp509I 10.1007/s004380100583 11810236 1 SL3.00 t4081.M024775.1 t4081 20K14T7 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GAACGTTACTAGAGTATCCAAGGAA 63533914 63533938 GGGTCCACTCAGAGATGCAACTTCC 63534629 63534605 NA NA HinfI 10.1104/pp.108.118430 18359841 1 SL3.00 t4081.M024779.1 t4081 RGA332 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CGATTCGTTTGAAGGAGCTAA 63720473 63720493 TTGTTTAAAAAGTCGTAAGCTTTCAT 63720719 63720694 NA NA AluI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024782.1 t4081 G2-4 1 CAPS t4081.G001 SL3.0 SL3.0ch09 ATGCCACGACCATAAATC 71883504 71883521 GACTGGGCTAATCACGAA 71883920 71883903 NA NA DraI 10.1007/s00122-014-2303-1 24756242 1 SL3.00 t4081.M024783.1 t4081 SR5 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CCCAAAAAAAGGCACAACAG 63727038 63727057 GTAGGATAGTGTAAAACAGTAAAGGT 63727874 63727849 NA 662+184 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 837 bp [cv. M82] HindIII 10.1111/nph.13348 25740416 1 SL3.00 t4081.M024785.1 t4081 M67-3 1 CAPS t4081.G001 SL3.0 SL3.0ch09 TGCGAATCCTTGTGGTAT 71924349 71924366 CTTACTGTGGACTGTGGG 71924870 71924853 NA NA SspI 10.1007/s00122-014-2303-1 24756242 1 SL3.00 t4081.M024788.1 t4081 CAPS7774 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GGAATAACCAAGGGGGTGTT 61762201 61762220 AAGAAGTTCCCTTCTTCCCTTA 61763008 61762987 NA 808 bp [M82]; 612+196 bp [Tristar (carrying I-7 gene introgressed from S.pennellii)] AseI 10.1111/mpp.12294 26177154 1 SL3.00 t4081.M024794.1 t4081 M1 1 CAPS t4081.G001 SL3.0 SL3.0ch11 CGCTCGGGCAAATAGTTCGTAATGG 54856513 54856537 TTCATGGTCTAGAAATGTCCCCTGT 54857551 54857527 NA NA BstUI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024795.1 t4081 C2_At1g07960 1 CAPS t4081.G001 SL3.0 SL3.0ch11 AAAGCCATTGTTACCGTCTCCGTG 54598613 54598636 AGCCATAAGTGGTGTGGAGGACTT 54599399 54599376 NA NA RsaI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024797.1 t4081 51355_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 GCTAGAGCTTTCAAATCACTCTCAA 54566976 54567000 GCTCATTGGCATTCACCTTCT 54567537 54567517 NA NA NA 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024798.1 t4081 C2_At2g28250 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TTTGGAGGTGCTTTGCCATACCAAG 54517802 54517826 AGACTTCATCATCGTCATGTGGTTCCG 54518252 54518226 NA NA DdeI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024799.1 t4081 C2_At3g55120_TaqI 1 CAPS t4081.G001 SL3.0 SL3.0ch05 ATTCACTCGAGTGACTATGATCTTGCC 4467229 4467255 TATGGAATCCAGCACTGCTTCTGAC 4467698 4467674 NA NA TaqI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024801.1 t4081 Rt14_XbaI 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CCACAATAAACATTAACCACGGAT 4498212 4498235 TGATGTTTGGCTCGAATATTTTGC 4498409 4498386 NA NA XbaI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024812.1 t4081 Ty1-BglII 1 CAPS t4081.G001 SL3.0 SL3.0ch06 TCAGGGTTTCACTTCTATGAAT 34461876 34461897 ATGAAGACAAAAACTGCTTC 34462483 34462464 NA 327+282 bp [NA]; 608 bp [NA]; A [NA]; G [NA] NA 10.1007/s10681-015-1442-z NA 1 SL3.00 t4081.M024813.1 t4081 Ty1-SspI 1 CAPS t4081.G001 SL3.0 SL3.0ch06 TCAGGGTTTCACTTCTATGAAT 34461876 34461897 ATGAAGACAAAAACTGCTTC 34462483 34462464 NA 608 bp (not cleaved) [NA]; A [NA]; cleaved [NA]; deletion [NA] NA 10.1007/s10681-015-1442-z NA 1 SL3.00 t4081.M024814.1 t4081 Ty1-TaqI 1 CAPS t4081.G001 SL3.0 SL3.0ch06 TCAGGGTTTCACTTCTATGAAT 34461876 34461897 ATGAAGACAAAAACTGCTTC 34462483 34462464 NA 608 bp (not cleaved) [NA]; C [NA]; T [NA]; cleaved [NA] NA 10.1007/s10681-015-1442-z NA 1 SL3.00 t4081.M024816.1 t4081 Ph3-MspI 1 CAPS t4081.G001 SL3.0 SL3.0ch09 AGGCAAATCTTGAAGAAGCA 71911373 71911392 TCGATCGTATGTAGACGATG 71911772 71911753 NA A [NA]; G [NA]; cleaved [NA]; not cleaved [NA] NA 10.1007/s10681-015-1442-z NA 1 SL3.00 t4081.M024817.1 t4081 Ve1-XbaI 1 CAPS t4081.G001 SL3.0 SL3.0ch09 CGAACTTGACTACATTGACC 56262 56281 CAGTCTTGAAAGGTTGCTCA 57004 56985 NA 410+310+22 bp [NA]; 410+332 bp [NA]; C [NA]; deletion [NA] NA 10.1007/s10681-015-1442-z NA 1 SL3.00 t4081.M024822.1 t4081 CT265 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GGAAGAACTGGTCATCTTTGGGCGCA 63798500 63798525 GCGAGGCAACACTATTCACTTGATGT 63799458 63799433 NA NA BstXI 10.1104/pp.108.118430 18359841 1 SL3.00 t4081.M024823.1 t4081 CT148 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GCATCATGAATGTGAATGATACAGA 63396342 63396366 GTACAGCCTAGTAAGTAACACGC 63397171 63397149 NA NA HindIII 10.1104/pp.108.118430 18359841 1 SL3.00 t4081.M024824.1 t4081 T0487 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GCTGCCACTATTGAGGTACGCAACAAC 64002900 64002926 GACAGCGTGAAATGATTCTCGAGGCA 64003896 64003871 NA NA HpaI 10.1104/pp.108.118430 18359841 1 SL3.00 t4081.M024825.1 t4081 T1581 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GCTACTAGAAGAACCTAGTCAGC 62987410 62987432 GTAATCGCCGGTGTCGTAAGCAGC 62987878 62987855 NA NA NA 10.1104/pp.108.118430 18359841 1 SL3.00 t4081.M024829.1 t4081 SR3 1 CAPS t4081.G001 SL3.0 SL3.0ch07 AACCGAGTTAGCATTCCCGTA 63715475 63715495 GGGGAATCTCGTGCTCTTTG 63716512 63716493 NA 700+353 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 630+341+67 bp [cv. M82] XmnI 10.1111/nph.13348 25740416 1 SL3.00 t4081.M024832.1 t4081 SR1-5 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GGCGTCATTTCAGAAGGCTCG 63726022 63726042 GCTGCTGGAAGAGTGTATAAGTCAAC 63726718 63726693 NA 382+219+98 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 382+317 bp [cv. M82] EcoRV 10.1111/nph.13348 25740416 1 SL3.00 t4081.M024839.1 t4081 Solyc08g077540 1 CAPS t4081.G001 SL3.0 SL3.0ch08 CCAAACAAAACCCATTTTTCA 61645313 61645333 CCCAATTCCTAAAACCTCAGAA 61645604 61645583 NA 292 bp [M82]; 209+83 bp [Tristar] AseI 10.1111/mpp.12294 26177154 1 SL3.00 t4081.M024840.1 t4081 Solyc08g077560 1 CAPS t4081.G001 SL3.0 SL3.0ch08 TTTTCTCATATGGGTTTCTCTGG 61662386 61662408 TCCCCTCTCCTACGAGACCT 61662777 61662758 NA 292+100+71 bp [M82]; 463 bp [Tristar] DraI 10.1111/mpp.12294 26177154 1 SL3.00 t4081.M024841.1 t4081 Solyc08g077730 1 CAPS t4081.G001 SL3.0 SL3.0ch08 TCTGAACTTCAATATTCTTCTGATGC 61747455 61747480 GCTTCTGCTTTAACCCCACTT 61747700 61747680 NA 246 bp [M82]; 177+69 bp [Tristar] HinfI 10.1111/mpp.12294 26177154 1 SL3.00 t4081.M024842.1 t4081 Solyc08g077780 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GCAATGACTTTGCTGTTTATGTC 61814451 61814473 AATTATAATCGAGACCACTTTACCC 61814746 61814722 NA 136+56+33+12+3 bp [M82]; 192+56+33+12+3 bp [Tristar] Tsp509I 10.1111/mpp.12294 26177154 1 SL3.00 t4081.M024843.1 t4081 TG687 1 CAPS t4081.G001 SL3.0 SL3.0ch02 GACTCATGGAGTAAATGCAATCAC 52840814 52840835 TTCACGTCCACTTGAGGTTTGG 52841335 52841314 NA NA ApoI 10.1073/pnas.93.26.15503 11038534 1 SL3.00 t4081.M024844.1 t4081 TG91 1 CAPS t4081.G001 SL3.0 SL3.0ch02 CGGTCTCAGTTGCAACTCAA 52784925 52784944 TGCAGAGCTGTAATATTTAGAC 52785289 52785268 NA NA DraI 10.1073/pnas.93.26.15503 11038534 1 SL3.00 t4081.M024846.1 t4081 TG361 1 CAPS t4081.G001 SL3.0 SL3.0ch02 CAACGACAAGCATTCCAGTC 53341938 53341957 GTACAGGAGTCCTCTGAGATGATC 53342489 53342466 NA NA ApoI 10.1073/pnas.93.26.15503 11038534 1 SL3.00 t4081.M024849.1 t4081 TG45 1 CAPS t4081.G001 SL3.0 SL3.0ch08 GAACTTCCACGCCATCAAAC 49340530 49340549 AGCGGAACTTGTCATCCATC 49340843 49340824 NA NA DdeI 10.1093/jxb/erv361 26175354 1 SL3.00 t4081.M024860.1 t4081 EP978 1 CAPS t4081.G001 SL3.0 SL3.0ch08 CTCGGCCCTAAAGTGTTTCA 46807949 46807968 TTGGCCAAGTTATGACCACA 46808806 46808787 NA NA NA 10.1093/jxb/erv361 26175354 1 SL3.00 t4081.M024863.1 t4081 SLG-1 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CGTTCATAATCTGCTAAGTTTCTA 63763138 63763161 GGTTTCTATTACTCCAGCATCCTC 63763778 63763755 NA 466+68+55+52 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 296+170+68+55+52 bp [cv. M82] RsaI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024864.1 t4081 gPT 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CATTATTGTGATGAGACCGACC 63767306 63767327 GGAGTCGTAAAGGAGGCTGTC 63767858 63767838 NA 340+86+22+4 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 426+22+4 bp [cv. M82] HinfI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024869.1 t4081 T1651 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GCACCGACAGTAATGACCCAAGG 64155495 64155517 ATTCAACCTTCAATACACCGC 64155909 64155889 NA 344+72 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 416 bp [cv. M82] DdeI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024877.1 t4081 Got-B 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CCAAGTAACCAACATTTCCAGTAG 63447892 63447915 AGTGGCAGTGAAAAGTCAGTTG 63448560 63448539 NA 650 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 440+210 bp [cv. M82] HpaII 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024880.1 t4081 bA9 1 CAPS t4081.G001 SL3.0 SL3.0ch07 TCAGAATACCTACAGCCAAGAAC 63604877 63604899 CATTGAGAGTGTTGAATTGGGC 63605505 63605484 NA 485+91+32+21 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 341+144+91+32+21 bp [cv. M82] NlaIII 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024882.1 t4081 bC9-T7 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GGAATCCAGTCTCTCTACCATCT 63949472 63949494 TTGGACTGAAGTTCGTCTGAT 63949975 63949955 NA 441+61 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 502 bp [cv. M82] BstNI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024883.1 t4081 bL7 1 CAPS t4081.G001 SL3.0 SL3.0ch07 TCTGCTTTTTCAAGAATACGG 63636609 63636629 TGTGGAAGTAGAGATGATAGCAAC 63637194 63637171 NA 270+239+56+21 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 239+200+70+56+21 bp [cv. M82] NlaIII 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024884.1 t4081 bP16 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CCCGAAATAGGCATCAGCAAT 63810048 63810068 GGACCAGAGAGTGTTGCTTTCG 63810284 63810263 NA 237 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 194+43 bp [cv. M82] HphI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024887.1 t4081 Sy-At2g42760 1 CAPS t4081.G001 SL3.0 SL3.0ch07 GGTAATCCCATTTCATCTTCTTG 63480721 63480743 TTCCGAGAAATCACAATCCC 63481371 63481352 NA 334+219+98 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 334+317 bp [cv. M82] HaeIII 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024888.1 t4081 Sy-At2g42770 1 CAPS t4081.G001 SL3.0 SL3.0ch07 CTTTGGACGGTAGTTACTTGCT 63528992 63529013 CCAAATAGTGCTAGGTCCTTCTG 63529554 63529532 NA 562 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 495+67 bp [cv. M82] XmnI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024889.1 t4081 Sy-At2g42780 1 CAPS t4081.G001 SL3.0 SL3.0ch07 TACTGAGACATAAAAGGCGTT 63885167 63885187 TCACTTGCTTCATTCGCTCA 63885539 63885520 NA 400 bp [IL7-3 (introgression line of the I-3 region from S. pennellii )]; 290+110 bp [cv. M82] RsaI 10.1007/s00122-008-0876-2 18813906 1 SL3.00 t4081.M024891.1 t4081 UF_07960F2 1 CAPS t4081.G001 SL3.0 SL3.0ch11 CGTGCCACCCCTTCATAATA 54599456 54599475 CCCTTGCGAGGAAAATACAG 54599751 54599732 NA NA BanI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024893.1 t4081 P3-6 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TGGTGTTTTGTGCGGTAAGA 54730561 54730580 TGAAATCGCATGTCCAAAGA 54731261 54731242 NA NA HaeIII 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024898.1 t4081 51372_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 GTTGGGAGCAACTCAGGTGA 54583396 54583415 CCAGCACTAGGACAGCTTCC 54583943 54583924 NA NA NA 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024899.1 t4081 UP15 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TCTCAAAGCGTTGATCGTTG 54593004 54593023 GCTTGCTCTTGTTGGTCTCC 54593505 54593486 NA NA EcoRV 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024900.1 t4081 P1-19 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TAACACCAAATCGCGTCTGA 54643433 54643452 TTGGGAAAACTATAGCATCG 54644026 54644007 NA NA AseI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024902.1 t4081 T0386A 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TTAGGCTTTGGCTTCTCGACCACT 54713512 54713535 ATGCTGATGAAAGATTGGGCGCTG 54714102 54714079 NA NA HinfI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024904.1 t4081 P4-2 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TCATTCACGGGGAAATTAGG 54754312 54754331 CAAGGGACCCAACTTTTTGA 54755210 54755191 NA NA HinfI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024906.1 t4081 P7-8 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TTGACCACGTTTTGGAAATG 54811891 54811910 GCAAGAAGACGCTTTTCGAT 54812676 54812657 NA NA HindIII 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024907.1 t4081 P8-8 1 CAPS t4081.G001 SL3.0 SL3.0ch11 AGTGGAACTTAATGGCTTTCC 54839221 54839241 CGCAATTGACGCATACATTC 54839958 54839939 NA NA TaqI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024908.1 t4081 51632_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 GGCACTGATGGAGGAGAGTT 54843355 54843374 AGCTCACCTGTTGACCTTCA 54843891 54843872 NA NA DraI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024909.1 t4081 P8-11 1 CAPS t4081.G001 SL3.0 SL3.0ch11 CGACAGTGTTTTCACCAGCTC 54846254 54846274 ACCGAGTATGCACCACCAAT 54847021 54847002 NA NA RsaI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024911.1 t4081 51663_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 CCCTCTTGCTTAGTGGGTGA 54874371 54874390 ACGCTCCAAATCAGAGGTTG 54874933 54874914 NA NA Hin6I 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024913.1 t4081 51697_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 CCCTCAAACCCAAGTGCTTAC 54908040 54908060 CTCCAACTTTGCGACTGTTCT 54908582 54908562 NA NA RsaI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024914.1 t4081 51752_MH 1 CAPS t4081.G001 SL3.0 SL3.0ch11 ACTCTTGCTTCACTCCTTGGA 54963323 54963343 ACCATACCTCAACTTGGAAACA 54963880 54963859 NA NA SspI 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024919.1 t4081 TG105A 1 CAPS t4081.G001 SL3.0 SL3.0ch06 TGAGAGCAGACAGCAGGCATCATC 41956447 41956470 ACATTTGGACAAATAGCAGAAGTC 41956654 41956631 NA NA HpyCH4IV 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024921.1 t4081 TG393 1 CAPS t4081.G001 SL3.0 SL3.0ch11 TGGATTTGATTAGCCGAAGG 56460614 56460633 CCAAGAATCCCAGAAGGAGA 56461348 56461329 NA NA DpnII 10.1007/s11032-014-0072-9 25076841 1 SL3.00 t4081.M024950.1 t4081 Rt09 1 CAPS t4081.G001 SL3.0 SL3.0ch05 TTAGCCCCGTTTTCGCCAAAAGCG 3416138 3416161 CGCGTGTTTTCTCCCTCCTATTA 3416397 3416375 NA NA BstUI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024951.1 t4081 C2_At1g13380 1 CAPS t4081.G001 SL3.0 SL3.0ch05 AGAGCATATCACGATACTTGGTGTG 3477798 3477822 AGGTGCTTTCTTGTTTCTTCTTTC 3478538 3478515 NA NA TaqI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024953.1 t4081 Rt10 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CTGGTTCAAATCCCATAACGAAAC 3585809 3585832 TTTCTCCCATTGAAAAAGTACCTC 3586290 3586267 NA NA BfaI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024956.1 t4081 C2_At1g25580 1 CAPS t4081.G001 SL3.0 SL3.0ch05 AAGATAACAGGTTTTGTGCGACCAGTC 4060695 4060721 ATTCCAACTGTTAATGAGGATGATGG 4060990 4060965 NA NA HinfI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024957.1 t4081 Rt12 1 CAPS t4081.G001 SL3.0 SL3.0ch05 ACAAGTTTCATTTTGCTCACGGC 4152724 4152746 CATAAGCTGGCAGTAGAACGAGA 4152953 4152931 NA NA MspI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024960.1 t4081 ch05-5.085 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CGAACCCTGAACTCGAAGAT 52555794 52555813 CATGAGCACCCGCTAACTTT 52555995 52555976 NA NA MnlI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024961.1 t4081 ch05-5.413 1 CAPS t4081.G001 SL3.0 SL3.0ch05 CCATTGTGTTACAGGCTTGTTC 55833020 55833041 GCCACCAAAAAGCATAAAGC 55833342 55833323 NA NA HinfI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.M024962.1 t4081 TO633 1 CAPS t4081.G001 SL3.0 SL3.0ch05 GATGGGCTATGCTTGCTGTT 66309559 66309578 ACATCCCCAATGTTGTTGTG 66310169 66310150 NA NA TaqI 10.1007/s10681-014-1180-7 NA 1 SL3.00 t4081.P0000075 t4081 PrRuG086-151 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch09 GAGTTCTTCCGTTCAAATCCTAAGCTTGAGAAG 14195347 14195374 CTACTACACTCACGTTGCTGTGATGCAC 14196431 14196399 NA NA 0 0 NA KspAI (HpaI) NA 10.1016/j.heliyon.2022.e10095 36033267 1 SLM_r2.0.pmol t4081.P0000081 t4081 Ty3-InDel/SNP9 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch06 CCTATCCTCAGTGTTTCGGTCA 36927171 36927192 GGCGAAAGACTTTGTGTACACA 36927839 36927818 NA NA 0 0 NA Bst1107I (BstZ17I)/ MunI (MfeI) NA 10.1016/j.heliyon.2022.e10095 36033267 1 SLM_r2.0.pmol t4081.P0000082 t4081 Ty3-SNP17 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch06 TCTCAGGTGATGCTGAGCAC 36923625 36923650 AGAGAACGAAAACGAAATTTCAAACA 36924437 36924418 NA NA 0 0 NA RsaI NA 10.1016/j.heliyon.2022.e10095 36033267 1 SLM_r2.0.pmol t4081.P0000086 t4081 Bwr3.2dCAPS 1 CAPS t4081.G009 SLM_r2.0.pmol NA TTTGAATTTGTTGATCTTCTTCTCgCT 0 0 ATTGATTTGGACGCGTGCTT 0 0 NA NA 0 0 129/(105 + 24) BsrBI NA 10.1038/s41598-022-12326-x 35589778 1 SLM_r2.0.pmol t4081.P0000089 t4081 Bwr4.3CAPS 1 CAPS t4081.G009 SLM_r2.0.pmol NA CTTGAGTTTCATATTTGCTAA 0 0 GTGTCAACATTCTTATTGTA 0 0 NA NA 0 0 (18 + 46 + 105)/(64 + 105) Ddel NA 10.1038/s41598-022-12326-x 35589778 1 SLM_r2.0.pmol t4081.P0000095 t4081 Bwr8.1CAPS 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch08 AGTCACACCAGATTGCAGGA 63842063 63842082 GGGGATTTTCGAACGTTTAATGC 63842225 63842203 NA NA 0 0 163/(132 + 31) NruI NA 10.1038/s41598-022-12326-x 35589778 1 SLM_r2.0.pmol t4081.P0000415 t4081 12EP239 _12EP240 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch03 AAAGTCGAATAAATTAGATGAACTTGA 61659784 61659810 ATTGGGTCTCTCCTCGCTCT 61660109 61660090 NA NA 0 0 NA NA NA 10.1007/s00122-021-03869-0 34128088 1 SLM_r2.0.pmol t4081.P0000428 t4081 RsR6-1 1 CAPS t4081.G009 SLM_r2.0.pmol NA GGAAATATTGGTTACAATCCAGTG 0 0 GAATACAACAAATCACTACCGGTC 0 0 NA NA 0 0 NA MnlI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000429 t4081 RsR6-2 1 CAPS t4081.G009 SLM_r2.0.pmol NA CTTCTTGATAGGACGACGTGATAT 0 0 CAATCAACGGATCACCCATTTTTC 0 0 NA NA 0 0 NA RsaI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000430 t4081 RsR6-3 1 CAPS t4081.G009 SLM_r2.0.pmol NA CTCTTTTTGCCAGATCTTGAATAG 0 0 CCATAGGTCAGCATCAAATTTCAA 0 0 NA NA 0 0 NA MnlI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000431 t4081 RsR6-4 1 CAPS t4081.G009 SLM_r2.0.pmol NA GTTTTCCTTGCAAATCATTTTGGC 0 0 GTATATGTTGAGTTCACAATTCCC 0 0 NA NA 0 0 NA MseI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000432 t4081 RsR6-5 1 CAPS t4081.G009 SLM_r2.0.pmol NA CTCAGAAACTGGATAAACTCGAAG 0 0 GGAGAAAGCAGCCAGCCATTTTT 0 0 NA NA 0 0 NA HinfI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000433 t4081 RsR6-6 1 dCAPS t4081.G009 SLM_r2.0.pmol NA CGGTGATGAGCAGGATTGATAAAA 0 0 AGTCTTGGCCTTTGACGTGAAAGTGACACAAGAAG 0 0 NA NA 0 0 NA HpyCH4III NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000434 t4081 RsR12-1 1 dCAPS t4081.G009 SLM_r2.0.pmol NA GTTACACGAACAAGCTTAAATTTCTAGATTTATCCC 0 0 GTAATCAATTCGAAGGACCTGTC 0 0 NA NA 0 0 NA AciI NA 10.1270/jsbbs.20027 32968349 1 SLM_r2.0.pmol t4081.P0000448 t4081 W1J2 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 GAGTGCTTGTGTCTCTTCTGTATTACAAG 84341888 84341914 GTTGATGATTTAAGACTATGGCTC 84342093 84342070 NA NA 0 0 NA HindIII NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000449 t4081 W1J4 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 TTGATTTAGGCTTGAACTTACCTTTATAG 84648428 84648456 ATACAATTACTAAGAAAGGAGGGAAATTCT 84648597 84648570 NA NA 0 0 NA Hpy188I NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000450 t4081 W1J26 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 TGCCCTTGGGATATGGCGTCTTAT 84914814 84914837 GACCACAAATATGTAGGGTGTAGTTCA 84915338 84915312 NA NA 0 0 NA HhaI NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000451 t4081 W1J28 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 ATGTTGCCAGCCACGGAGAATC 85176558 85176577 GATGTGGTGCAGCAATCACTAAAG 85176814 85176791 NA NA 0 0 NA TaqI NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000452 t4081 W1J22 1 dCAPS t4081.G009 SLM_r2.0.pmol NA GGTTCAGATCCAAAAGTGTCA 0 0 GATGATTGAGGCGTCCAGACCA 0 0 NA NA 0 0 NA Tsp45I NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000453 t4081 W1J4 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 TTGATTTAGGCTTGAACTTACCTTTATAG 84648428 84648456 ATACAATTACTAAGAAAGGAGGGAAATTCT 84648597 84648570 NA NA 0 0 NA Hpy188I NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000454 t4081 W1J11 1 dCAPS t4081.G009 SLM_r2.0.pmol NA CGAATTTCCCACTAATTACTTAATACTAA 0 0 CCAACAATTCTGCCCTCGACTG 0 0 NA NA 0 0 NA DdeI NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000455 t4081 W1J37 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 GACACCACTTAAACTCACTTT 84717191 84717211 GTTCACTTCTCCCTTTTC 84717313 84717296 NA NA 0 0 NA AccI NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000456 t4081 W1J13 1 dCAPS t4081.G009 SLM_r2.0.pmol NA AAATAGTAAAAGAAACAATCCTAAGTAGA 0 0 GGAGAGACATAGGCAGAGCAT 0 0 NA NA 0 0 NA AccI NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000457 t4081 W1J19 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch01 CTTCAAGTTGTCTTACAATCTTCTCCGTCG 84792766 84792795 CTCCATCCTCAAAAGAAGGCCGATAGACCC 84792953 84792926 NA NA 0 0 NA HPaII NA 10.3389/fgene.2020.00881 32849843 1 SLM_r2.0.pmol t4081.P0000497 t4081 14IY218 1 CAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch06 ATGAAGACAAAAACTGCTTC 36916653 36916674 TCAGGGTTTCACTTCTATGAAT 36917260 36917241 NA NA 0 0 NA SspI NA 10.3390/plants10010009 33374801 1 SLM_r2.0.pmol t4081.P0000499 t4081 18IY23 1 dCAPS t4081.G009 SLM_r2.0.pmol NA AGAAGAAATCCAAGAAAAGCAATAAGAATGAGGCC 0 0 CTTGTAATCACGTCCACAACG 0 0 NA NA 0 0 T/A StuI NA 10.3390/plants10010009 33374801 1 SLM_r2.0.pmol t4081.P0000501 t4081 14IY5 1 dCAPS t4081.G009 SLM_r2.0.pmol SLM_r2.0ch04 TTCAAGTCCTTCTTCAAC 3702181 3702220 ATAGATTTAAACAACAATTATAGAGATAAAAAAGTTACCTGT 3702483 3702466 NA NA 0 0 T/G RsaI NA 10.3390/plants10010009 33374801 1 SLM_r2.0.pmol