marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t3750.M000189.1 t3750 MdACS3a-2 1 CAPS t3750.G001 GDDH13v1.1 Chr15 CTACATGTACCCAACAACTGTCAA 16182684 16182707 TGTATGCAGCCCTAGATATCT 16183014 16182994 NA 331 bp [Delicious (MdACS3a-1/MdACS3a-1)]; 331+186+147 bp [Fuji (MdACS3a-1/MdACS3a-2)]; 361+186+147 bp [Golden Delicious (MdACS3a-1V/MdACS3a-2)]; 353+186+147 bp [Jonathan (MdACS3a-1/MdACS3a-2)]; 186+147 bp [Kitanosachi (MdACS3a-2/MdACS3a-2)]; 331+186+149 bp [McIntosh (MdACS3a-1/MdACS3a-2)]; 361+353 bp [Megumi (MdACS3a-1V/MdACS3a-1)]; 361+186+147 bp [Ralls Janet (MdACS3a-1V/MdACS3a-2)]; 359+361 bp [Worcester Pearmain (MdACS3a-1/MdACS3a-1V)] ScaI 10.1270/jsbbs.62.46 23136513 1 Mdomestica_491_GDDH13v1.1 t3750.M000206.1 t3750 Mb2 1 CAPS t3750.G001 GDDH13v1.1 Chr09 TTGGGTGTTTGCTGTTGC 35543131 35543148 TTCCCTTATTTGTTCCGTTG 35543827 35543808 NA not cleaved [FG (‘Fuji’ x ‘Gala’) hybrid plants with MdMYB1-2 allele]; cleaved [FW (‘Fuji’ x an unknown red-skinned cultivar) hybrid plants (not possessed MdMYB1-2 allele)] HaeIII 10.1007/s00438-014-0886-5 25106952 1 Mdomestica_491_GDDH13v1.1 t3750.M018868.1 t3750 ARGH12 1 CAPS t3750.G001 GDDH13v1.1 Chr00 GTTTACGAGAGAATTTCTCATG 26813173 26813194 GAGAAAAAGAGCTTCATCTTGG 26813550 26813529 NA NA AluI 10.1007/s00122-004-1624-x 15052401 1 Mdomestica_491_GDDH13v1.1 t3750.M018868.2 t3750 ARGH12 2 CAPS t3750.G001 GDDH13v1.1 Chr08 GAGAAAAAGAGCTTCATCTTGG 1597818 1597839 GTTTACGAGAGAATTTCTCATG 1598195 1598174 NA NA AluI 10.1007/s00122-004-1624-x 15052401 1 Mdomestica_491_GDDH13v1.1 t3750.M018873.1 t3750 ARGH23 1 CAPS t3750.G001 GDDH13v1.1 Chr04 CAAATGTATACCAACTGAAAAGC 1292611 1292633 CATTGCTTCCAGTTTAAATGTC 1293366 1293345 NA NA AluI 10.1007/s00122-004-1624-x 15052401 1 Mdomestica_491_GDDH13v1.1 t3750.M019193.1 t3750 ARGH17 1 CAPS t3750.G001 GDDH13v1.1 Chr02 GATATCCTTTGTTTGGACAACC 3313493 3313513 TTGCCGACGTTCGTGATGCT 3313867 3313848 NA 56+38+227+8+49 bp ['Golden Delicious']; 321+8+49 bp [GMAL 2473] AluI 10.1007/s11032-010-9391-7 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019263.1 t3750 GD254882-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr01 ACCTTTATGACGGATGTGGTTC 30908003 30908024 TGACGTCTCAGAGCGACTTG 30908289 30908270 NA NA BsaAI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019569.1 t3750 GD254867a-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr02 CTGCTAGCTTGCTTGATCTTG 30987253 30987273 CTTAAGCGTATGTTCCACCAC 30987997 30987977 NA NA MboI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019571.1 t3750 GD254943-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr02 CCGACTGGAAATCTACTGGTG 6238377 6238397 TTGCGCAAATTTACGGACTAC 6238678 6238658 NA NA PstI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019573.1 t3750 GD255018-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr15 AATGCGAGCTGGATACACAC 29467280 29467299 GGCTACCAGAGGAGGACTTG 29467802 29467783 NA NA HaeIII 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019576.1 t3750 GD254836-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr03 ACCATTTCATTTCCAACGAGTCC 28923754 28923776 AGCGTTGGGATGATTGAGAGC 28924853 28924833 NA NA AluI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019578.1 t3750 GD254954-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr03 TGGGGAGGTGGTGAAGAT 36305645 36305662 GCTGCAATGCGAGTTTTT 36306617 36306600 NA NA NA 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019582.1 t3750 GD254869-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr04 CTTCAACTTCAAGCCGTTAAACC 488185 488207 CGGACATCTCCGTGAAGTAGG 488604 488584 NA NA HaeIII 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019583.1 t3750 GD254946-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr04 ACATCGGTGCTTGAAATGGT 8690119 8690138 AAGGAAGAACACATTGATTTAGCA 8690788 8690765 NA NA HaeIII 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019588.1 t3750 GD255015-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr05 CCCTTGAATATCAAAGCCAAAG 44187914 44187935 GCTGGTCAGCTCAGTTGTTTC 44188662 44188642 NA NA NlaIV 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019589.1 t3750 GD255061-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr05 GCTCGTAAGCCAAAGAGCAAG 44704966 44704986 AAAGCAGGCCATTCCACTATG 44705474 44705454 NA NA EcoRI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019592.1 t3750 GD254867b-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr02 CTGCTAGCTTGCTTGATCTTG 30987253 30987273 CTTAAGCGTATGTTCCACCAC 30987997 30987977 NA NA MboI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019593.1 t3750 GD254948-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr14 GTACGATCCTCAGCAAT 31590961 31590977 ATGGCATACTACGATATGAG 31591829 31591810 NA NA MseI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019595.1 t3750 GD254916-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr07 TGTTTACTGCATCTTCACTGGT 19693046 19693067 CCATGCCATCTTACACAAGC 19694057 19694038 NA NA NA 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019596.1 t3750 GD255064-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr07 TTGTTGAATATCTTGTTTGTGTGC 840495 840518 ACTTGGCACCCTCGTTCTT 840978 840960 NA NA NlaIII 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019605.1 t3750 GD255031-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr09 TGGCGAATGTGGAACTAAAG 302204 302223 ACGAGAGGCACAAAACCTTC 302577 302558 NA NA CspCI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019609.1 t3750 GD255078-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr10 GATATCAAAGGCCCGAGAGTC 16473688 16473708 AATCCCAATGACTCACCATCTC 16474292 16474271 NA NA AluI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019612.1 t3750 GD254899-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr12 TTTAACTGGAGGCGTTCTTCCTC 29682658 29682680 AGGCTTTGGCTGCATGTGAC 29684545 29684526 NA NA MboI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019614.1 t3750 GD254798-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr13 GCGAGCCCTTGTAATAGGAG 6705985 6706004 AGAAAAGGAAAGGGGAGAGC 6706528 6706509 NA NA BsaAI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019617.1 t3750 GD254927-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr14 CTTATCTCCGGGACCAATTTAC 13060088 13060109 GTTAGAGGGAGGGGAAACG 13060975 13060957 NA NA MnlI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019618.1 t3750 Md-ACS5A-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr14 CTCAAAATTCCACGGGAAAA 17953177 17953196 AGCTTTCAGTCTCGGCGAAT 17953538 17953519 NA NA PsiI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019621.1 t3750 GD254831-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr15 ATCTAAATGGGCAACATGCAG 10979223 10979243 CCAAGGTTTGACAGTTGGAAG 10980046 10980026 NA NA RsaI 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019625.1 t3750 GD254886-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr16 CAACATTGGAAACATCAGAGTG 1614294 1614315 GAAGCTTGTCAGTGTTGAGGA 1615127 1615107 NA NA NA 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.M019627.1 t3750 Md-EXPA4-CAPS 1 CAPS t3750.G001 GDDH13v1.1 Chr16 CAAGGTCACAACCAGTGACG 4957895 4957914 TGATGGGAGAGAGCCCTTTT 4958208 4958189 NA NA NA 10.1007/s11032-011-9584-8 NA 1 Mdomestica_491_GDDH13v1.1 t3750.P0000173 t3750 CAPS1455 1 CAPS t3750.G002 Malus_x_domestica_HFTH1_v1.0.a1 NA GCCGCTTCTGGACTATCACTA 0 0 TTCTTCAACCGCAAACTCCT 0 0 NA NA 0 0 NA NA NA 10.1038/s41438-020-00393-y 33082977 1 Malus_x_domestica_HFTH1_v1.0.a1 t3750.P0001589 t3750 FGT_BamHI 1 CAPS t3750.G002 Malus_x_domestica_HFTH1_v1.0.a1 Chr01 CTCCACTCGGAACTTCAAAT 32557000 32557019 GATCGTAGCGTGCTACATTATT 32557148 32557127 NA NA 0 0 NA NA NA 10.1007/s11032-014-0031-5 NA 1 Malus_x_domestica_HFTH1_v1.0.a1