Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0345400-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:16253132:16265099:-1 gene:Os05g0345400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os05t0345400-02)
Sequence	ATGGCAAGCAAGTTCGGGCTCGCCGGGGGCATCCCGGAGAGGCGGGTGCGGCCGATCTGG GACGCCGTCGACTCGCGCCAGTACAAGGCTGCGCTCAAGCTCTGCACCGCGCTCCTCGCC AAGCACCCGACCTCCCCTTACGTCCTCGCTCTCAAGGGTCTTATTTTGGAAAGGATGGGA AAGCCTGATGAAGCACTCAGTGTGTGTTTGAATGCCAAGGAGCAGTTGTATTCTGACAAC ATCTTTCATTTTGATGATCTCACTCTTAGCACCCTGCAGATAGTATTTCAAAGGCTTGAG CGATTGGATCTTGCTACTTCATGCTATGAGTATGCTTGTACAAAGTACCCCAATAACTTG GAGTTAATGATGGGCCTTTTTAATTGCTATGTCAGAGAGTACTCATATGTGAAGCAGCAA CATACAGCAATAAAAATGTACAAAACCGTTGGAGAAGAAAGGTTTTTGCTCTGGGCTATT TGCAGTATTCAACTGCAGGTACACTTTAGCATTGGAGGTGAGAAGTTATTACCACTGGCT GAAGCGTTGCTTAAAAAACACATAACTTCTCATAGTTTACATGAGCCAGAAGCACTGGCA CTCTATATTTCAATTCTGGAACAGCAGTCAAAATATGATGCTGCTTTGGAAGTTCTTTCT GGAGACTTGGGGTCTCTTATGGGAAGGGAGGAGGACAAGCTTCGTCTGCAGGGACGGCTT CTTGCTCAAGCATGCAACTACACTGCTGCTTCCGAGATATATCAAAAGATCCTTGAATCT TGTCCTGATGACTGGGAGTCCTTTCTCCATTATTTAGGCTGCTTGCTGGAGCATGATGTG AACTTGCCTAAATCAAGGACAAGTGAACACCCTTCTTCATTACCTGTAGATTCTGCTCTG GCCCTTAAGACTTCTTTAAGCGACGAGCTGGTAGAGTCTCGCCTTGCAAGTGCATTGTCA TTCGTGCAAAAGCTACAGGTTAATGACACCAGCGACTGTGTCAGAGGACCTCATTTAGCC AGTATTGAAATTGAACGGCAACGGTGCCGAAGTGGAAACCCAACTGATAGAAAATTCATT GAAGCTTTGATAAATTACTTTCACAGATTTGGTCATTTGTCTTGTGCAGCATCAGATGTT GAGATATACCTCCACATGCTATCAAGTGATGAAACAACTGAATTGTTAGATACAATCTCC AGATCTTTTGATGCATCATCACTTTCAGTAAAAGGACTGGGTTTGGCAATAACCACTTTT AAGGTTCAAGAACTCCTGGGAACCTTTTTCTCAAAATCAACTACAGAACTCCAGCACATT GCAAAAGGAATGGTTGAGGCATTTTATAAAAACTTGCCTCTCTCAAGAGACCTTGATCCT CAAGAAAGCATGCATGGTGAAGAATTGCTATGTATGGCCAGCAGTATTCTTGTGCAGCTA TTCTGGCGTACAAGGAACTTAGGATACTTAATTGAAGCAATTCTGGTGCTAGAGTTTGGA TTGACTGTTCGCAAGTATGTCTGGCAATACAAAGTTATGCTGGTGCATCTCTACTCTTAC CTAGGAGCACTTCCATTAGCACATCGATGGTATGTAACCCTGGAGGTGAAAAACATTCTT CTTGAATCTGCGTCGCATCACATCCTGCCACAGATGTTGAATTCACCTTTACTGCAGCAA ACTGCTGATCTTGTTAAGGACTATCTAAAATTTATGGATGATCATTTGAAAGAATCTGCT GATCTTACCTGTCTTGCATATAGACACCGTACTTACTCAAAGGTAATTGAATTTGTTCAG TTCAAAGAACGCCTGCAACACTCCATGCAGTATCTTTCTGTAAGATCTGATTCCATAATA TTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAGTCTATTCTTGAAAATGTG AACCATGGGGCAAGGTTGGTTGAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTT AACGAAGATCTTCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCA GAACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCGTGTGAACACAAA TCTACTGAGAAGGATGACTCAAAGATAAAATATGCTGAGAGAAAAGCTCTTCTTCCTCGT CTTGTTTATCTTTCGATGCATGGTTGTGCATCTTCCCTCAGGGAGACTCAACTCAATGGA TCTGGTTTGGATACTGATGCCACAGAGATGAAACCATTACTTTTGAAATATGCTAGGAGT ATTGGATATTCCATTGATGATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAG TCTGTCAAGGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT GCATGGAACTTGTGGTCTAATGAATCGGTAGTCCCCAGAGCTGATGAGAGCAGCCCAAGT TCCTGGCAAATTGTGGATAGCTTGGTAAAAATTTGCGTAGAGGAGCAGCTGATTGATGCC AACCGAATCCTAACTTCTCCTGGCAATAACATACCAGTCCTAGTGCAGATGATTACAGAA CCCATTTCTTGGCATCTCGTGGTTATTCAGTCTTGTGTGAGGTCGATGGCTCCACAGGGA AAGAAGAAAAAGAAGGGTGGTCCATCGGAGCGACCAAATGTACCTCGGTTGCAGGCGATT CAAAGATCTGTGCAGTGCATGATCGACACACTCCGCAGTGTTCAATCCTGGTTATCTGAC CAGATGAGGCCGGAGGAGCAAGCTTTGGATATTTTGTTGTCATATTTGCAAGGAGGTAAT GAGGATGGGCCAGGACAGATATCCTGTATCTTGGAGGAGAATTCAGCAAGACATAACCCT GAACTCGGCGAACGGATTGCTCAATCTTTGGAAACATGGAGTTCTGCTGGTGTGGTCAGA AGAATCGTTGGAGCAGAGAAGGAGCTGTTAGTTGAGTTAAAGAAAATATGCGACTCAAAA CTAAAGCTGCTTGCTTCAGTATCGGCTTCTCTATCATCGGCCTTACATTGA

Peptide Sequence

PEP ID	Os05t0345400-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:16253132:16265099:-1 gene:Os05g0345400 transcript:Os05t0345400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os05t0345400-02)
Sequence	MASKFGLAGGIPERRVRPIWDAVDSRQYKAALKLCTALLAKHPTSPYVLALKGLILERMG KPDEALSVCLNAKEQLYSDNIFHFDDLTLSTLQIVFQRLERLDLATSCYEYACTKYPNNL ELMMGLFNCYVREYSYVKQQHTAIKMYKTVGEERFLLWAICSIQLQVHFSIGGEKLLPLA EALLKKHITSHSLHEPEALALYISILEQQSKYDAALEVLSGDLGSLMGREEDKLRLQGRL LAQACNYTAASEIYQKILESCPDDWESFLHYLGCLLEHDVNLPKSRTSEHPSSLPVDSAL ALKTSLSDELVESRLASALSFVQKLQVNDTSDCVRGPHLASIEIERQRCRSGNPTDRKFI EALINYFHRFGHLSCAASDVEIYLHMLSSDETTELLDTISRSFDASSLSVKGLGLAITTF KVQELLGTFFSKSTTELQHIAKGMVEAFYKNLPLSRDLDPQESMHGEELLCMASSILVQL FWRTRNLGYLIEAILVLEFGLTVRKYVWQYKVMLVHLYSYLGALPLAHRWYVTLEVKNIL LESASHHILPQMLNSPLLQQTADLVKDYLKFMDDHLKESADLTCLAYRHRTYSKVIEFVQ FKERLQHSMQYLSVRSDSIILSLKQKAESLDEVESILENVNHGARLVELSNEDNVKRFTF NEDLQARPWWTPTTSVNFLSEPFDEGSTPACFRAKACEHKSTEKDDSKIKYAERKALLPR LVYLSMHGCASSLRETQLNGSGLDTDATEMKPLLLKYARSIGYSIDDALSVILGMSSGKK SVKDFTPDIVSWMSFAVFINAWNLWSNESVVPRADESSPSSWQIVDSLVKICVEEQLIDA NRILTSPGNNIPVLVQMITEPISWHLVVIQSCVRSMAPQGKKKKKGGPSERPNVPRLQAI QRSVQCMIDTLRSVQSWLSDQMRPEEQALDILLSYLQGGNEDGPGQISCILEENSARHNP ELGERIAQSLETWSSAGVVRRIVGAEKELLVELKKICDSKLKLLASVSASLSSALH

Transcript Sequence

Transcript ID	Os05t0345400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:16253132:16265099:-1 gene:Os05g0345400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os05t0345400-02)
Sequence	GCGGCGTCTCTCTCCCTTTCTCTCCCCCTCCCTTCCCTTCCCATCACCGCCGCGGAACGC GCCGCCGCCAGAAACCCTAACCCTAGATCGCGAGGGGTGGTGGGTGGCCGGGCCGGCGGG GGGTGGGGGGATGGCAAGCAAGTTCGGGCTCGCCGGGGGCATCCCGGAGAGGCGGGTGCG GCCGATCTGGGACGCCGTCGACTCGCGCCAGTACAAGGCTGCGCTCAAGCTCTGCACCGC GCTCCTCGCCAAGCACCCGACCTCCCCTTACGTCCTCGCTCTCAAGGGTCTTATTTTGGA AAGGATGGGAAAGCCTGATGAAGCACTCAGTGTGTGTTTGAATGCCAAGGAGCAGTTGTA TTCTGACAACATCTTTCATTTTGATGATCTCACTCTTAGCACCCTGCAGATAGTATTTCA AAGGCTTGAGCGATTGGATCTTGCTACTTCATGCTATGAGTATGCTTGTACAAAGTACCC CAATAACTTGGAGTTAATGATGGGCCTTTTTAATTGCTATGTCAGAGAGTACTCATATGT GAAGCAGCAACATACAGCAATAAAAATGTACAAAACCGTTGGAGAAGAAAGGTTTTTGCT CTGGGCTATTTGCAGTATTCAACTGCAGGTACACTTTAGCATTGGAGGTGAGAAGTTATT ACCACTGGCTGAAGCGTTGCTTAAAAAACACATAACTTCTCATAGTTTACATGAGCCAGA AGCACTGGCACTCTATATTTCAATTCTGGAACAGCAGTCAAAATATGATGCTGCTTTGGA AGTTCTTTCTGGAGACTTGGGGTCTCTTATGGGAAGGGAGGAGGACAAGCTTCGTCTGCA GGGACGGCTTCTTGCTCAAGCATGCAACTACACTGCTGCTTCCGAGATATATCAAAAGAT CCTTGAATCTTGTCCTGATGACTGGGAGTCCTTTCTCCATTATTTAGGCTGCTTGCTGGA GCATGATGTGAACTTGCCTAAATCAAGGACAAGTGAACACCCTTCTTCATTACCTGTAGA TTCTGCTCTGGCCCTTAAGACTTCTTTAAGCGACGAGCTGGTAGAGTCTCGCCTTGCAAG TGCATTGTCATTCGTGCAAAAGCTACAGGTTAATGACACCAGCGACTGTGTCAGAGGACC TCATTTAGCCAGTATTGAAATTGAACGGCAACGGTGCCGAAGTGGAAACCCAACTGATAG AAAATTCATTGAAGCTTTGATAAATTACTTTCACAGATTTGGTCATTTGTCTTGTGCAGC ATCAGATGTTGAGATATACCTCCACATGCTATCAAGTGATGAAACAACTGAATTGTTAGA TACAATCTCCAGATCTTTTGATGCATCATCACTTTCAGTAAAAGGACTGGGTTTGGCAAT AACCACTTTTAAGGTTCAAGAACTCCTGGGAACCTTTTTCTCAAAATCAACTACAGAACT CCAGCACATTGCAAAAGGAATGGTTGAGGCATTTTATAAAAACTTGCCTCTCTCAAGAGA CCTTGATCCTCAAGAAAGCATGCATGGTGAAGAATTGCTATGTATGGCCAGCAGTATTCT TGTGCAGCTATTCTGGCGTACAAGGAACTTAGGATACTTAATTGAAGCAATTCTGGTGCT AGAGTTTGGATTGACTGTTCGCAAGTATGTCTGGCAATACAAAGTTATGCTGGTGCATCT CTACTCTTACCTAGGAGCACTTCCATTAGCACATCGATGGTATGTAACCCTGGAGGTGAA AAACATTCTTCTTGAATCTGCGTCGCATCACATCCTGCCACAGATGTTGAATTCACCTTT ACTGCAGCAAACTGCTGATCTTGTTAAGGACTATCTAAAATTTATGGATGATCATTTGAA AGAATCTGCTGATCTTACCTGTCTTGCATATAGACACCGTACTTACTCAAAGGTAATTGA ATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATCTTTCTGTAAGATCTGA TTCCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAGTCTATTCT TGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACGAAGACAACGTGAAACG CTTTACTTTTAACGAAGATCTTCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAA TTTTCTGTCAGAACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCGTG TGAACACAAATCTACTGAGAAGGATGACTCAAAGATAAAATATGCTGAGAGAAAAGCTCT TCTTCCTCGTCTTGTTTATCTTTCGATGCATGGTTGTGCATCTTCCCTCAGGGAGACTCA ACTCAATGGATCTGGTTTGGATACTGATGCCACAGAGATGAAACCATTACTTTTGAAATA TGCTAGGAGTATTGGATATTCCATTGATGATGCCCTTAGTGTGATTCTGGGTATGTCATC TGGCAAGAAGTCTGTCAAGGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGT ATTTATCAATGCATGGAACTTGTGGTCTAATGAATCGGTAGTCCCCAGAGCTGATGAGAG CAGCCCAAGTTCCTGGCAAATTGTGGATAGCTTGGTAAAAATTTGCGTAGAGGAGCAGCT GATTGATGCCAACCGAATCCTAACTTCTCCTGGCAATAACATACCAGTCCTAGTGCAGAT GATTACAGAACCCATTTCTTGGCATCTCGTGGTTATTCAGTCTTGTGTGAGGTCGATGGC TCCACAGGGAAAGAAGAAAAAGAAGGGTGGTCCATCGGAGCGACCAAATGTACCTCGGTT GCAGGCGATTCAAAGATCTGTGCAGTGCATGATCGACACACTCCGCAGTGTTCAATCCTG GTTATCTGACCAGATGAGGCCGGAGGAGCAAGCTTTGGATATTTTGTTGTCATATTTGCA AGGAGGTAATGAGGATGGGCCAGGACAGATATCCTGTATCTTGGAGGAGAATTCAGCAAG ACATAACCCTGAACTCGGCGAACGGATTGCTCAATCTTTGGAAACATGGAGTTCTGCTGG TGTGGTCAGAAGAATCGTTGGAGCAGAGAAGGAGCTGTTAGTTGAGTTAAAGAAAATATG CGACTCAAAACTAAAGCTGCTTGCTTCAGTATCGGCTTCTCTATCATCGGCCTTACATTG AAATTGAAAAATTTTGCTCGTGAATTTTGTTCCATTGTTGTGACATATGTTGTGAGTGTA ACTGTTTGGCTTTGCGCCGTCCATTCTTTACTTTGTTTCTATGAGATTTTGCTGGAGTGA TCCCTGCTTCTCCCC