Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0617500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:24534950:24546684:-1 gene:Os01g0617500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0617500-01);Similar to predicted protein. (Os01t0617500-02)
Sequence	ATGGGCTCCTCGCTCCCGGCCAAGGAGGCCAACCTCTTCAAAGTCATCGTCAAATCCTAT GAGACAAAGCAATATAAGAAGGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCT GAGCATGGCGAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCT GAAGCATATGAACTTGTTCGCCGTGGATTGAAGAATGATCTGAAGAGTCATGTGTGCTGG CATGTCTATGGCTTGCTTTATCGATCAGACAGAGAATACAGAGAAGCCATAAAATGTTAC AGAAATGCTCTGAGGATTGATCCAGATAACATAGAAATTCTACGTGACCTGTCACTTCTC CAGGCACAAATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTAACACTG AAGCCAAATCACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAT TCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCC CCAGAGAATGAGCGATATGAACACAGTGAAATGCTTCTGTATAAGATTTCATTGTTCGAG GAATGTGGGATGCTGGACAGAGCTCTTGAGGAGATGCAGAAGAAGGAGAGCAAAATTGTT GACAAGCTATCGTTCAAAGAACAAATGGCCTGCATTTTGTTGAAACTTGGCCGCTTTGAG GAGGCTGAGAAAACATATAGGTCCCTGCTTTTCATGAATCCTGATAACTACAAGTATTTC ATAGCTGTTCAAAAGTGCCTTGGTCTATACTCAGAGAATGGTCAGTATTCCACTGATGAT GTTGACCGATTATGCGAATTGTATAGCTCACTTAAAGAAGAATATGGTTGGTCATCTGCT GTTAAGCGCATACCCCTTGATTTCCTGGAAGGAGAGAAATTTCAGGAGGCAGCAGATAAT TATGTCAGACCCCTATTAACCAAGGGAGTACCATCACTATTTTCTGATCTTAGCCCATTG TACGAGCAACCTGGCAAGGCAAACATATTGGAGGAATTGTTTCTTAAGCTAGAACGTTCA ATTAGGACTTCAGGATGCTTCCCAGGAAGTTCGCATACGGAACCTCCATCCACACTCCTG TGGACTCTGTTTTTGATCTCTCAGCACTATGACAGAAGAGGCCAGTATGATATTGCTCTA GATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG GGGAAGATATTGCAGCATGCTGGCAATTTCTCAGCGGCTGCAGCATTGGCGGATGAAGCT AGGTCAATGGATCTCGCTGATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAA GCTGACCAGGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG CACAATAATCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCTTCTGGTGAGAGTTAC TATCGTCAAGGTGATCTCGGCAGGGCTCTCAAAAATTTCTTGGCTGTTGAGAAGCATTAT GCTGACATGACTGAAGATCAATTTGACTTCCATTCGTATTGCTTACGGAAAATGACACTA AGGGCATATGTTTCTATGCTGAAGTTTCAAGATCGCTTGCATGCTCATGAATATTTCCAC AAGGCTGCAGCAGGAGCTATCAGGTGTTATATGAAATTGCATGATTCACCATCAAAATCA TCCACTGAGGAGAATGATGAAATGTCGAAATTGCCACCTGCTCAGAGGAAGAAACTGAGA CAAAAACAGAAAAAGGCAGAAGCTCGTGCCAAAAGGGAGGCTGAAGAGAAACAGGAGGAT GAGACAACTTCATCTCACACTTCAAAATCTGGGAAGAAACAAAACGCAAGACCAGTTGAT TTGGATCCACATGGTGAAAAGTTAGTGCAGATTGAAAACCCACTTGCTGAAGGAACAAAG TATTTGAAGCTTCTGCAGAATAACTCATCAGACTCGTTGGAAACTCATACACTTTCATTT GAACTCAACATGAGAAAACAAAAGATTTTACTTGCTTTTCAGGCAGTCAAGCAGCTCATT AAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGATAAGGTTTTTCCACAAGATA AACAATCTTCCCTCTCCAGGGACAGATTCTGAAAAGCTAATTTGGAATGTTTTGGAAGCT GAGCGTCCAGATTTAAGGCAGTTGCATGGGAAGTCTCTTGTTGAAGTAAATAGAAGTTTC CTTGAAAAGCACAGTGCTTCTTTGACGCACAGAGCAGCAGCAGCTGAAATGATGTACCTC TTGGAACCAGATAAGAAGCTTGAGGCAATCAAATTAATTGAAGATTCAGTAAACAGCACA GCATCAGGAAACAGTGTGCTTGGTCCTGTGAATGAATGGAAAATTCTAGACTGTATTGAT GTTCACAAATTGCTGGAGACAATCTTTGGTGACCAGGATGTGGCAAACAGTTGGAAGGCA CGATGCGCTGAATATTTCCCATACTCAACCTACTTTGAAGGCATTAAGAGTGCTAGTGCT GCCTATTGTTCTGTTGCCAATAGTCTTGAGGATTCATCAGAAAATGGAATTGTAGCAAAT GCGCAAATGAAATCAGCAGACGGAGAAACATGCACTTTGAATGGAACTGTGCATATTGTG GATGAACTGAGCAATCTAAGCATTAGGTAA

Peptide Sequence

PEP ID	Os01t0617500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:24534950:24546684:-1 gene:Os01g0617500 transcript:Os01t0617500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0617500-01);Similar to predicted protein. (Os01t0617500-02)
Sequence	MGSSLPAKEANLFKVIVKSYETKQYKKGLKAADSILKKFPEHGETLSMKGLTLNCMDRKS EAYELVRRGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL QAQMRDLSGFVETRQQLLTLKPNHRMNWIGFAVAHHLSSNSSKAIEVLEAYEGTLEDDYP PENERYEHSEMLLYKISLFEECGMLDRALEEMQKKESKIVDKLSFKEQMACILLKLGRFE EAEKTYRSLLFMNPDNYKYFIAVQKCLGLYSENGQYSTDDVDRLCELYSSLKEEYGWSSA VKRIPLDFLEGEKFQEAADNYVRPLLTKGVPSLFSDLSPLYEQPGKANILEELFLKLERS IRTSGCFPGSSHTEPPSTLLWTLFLISQHYDRRGQYDIALDKIDEAISHTPTVIDLYSIK GKILQHAGNFSAAAALADEARSMDLADRYLNSECVMQMLQADQVGLAEKTAVLFTKDGDQ HNNLHDMQCMWYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKMTL RAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPAQRKKLR QKQKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTK YLKLLQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKI NNLPSPGTDSEKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYL LEPDKKLEAIKLIEDSVNSTASGNSVLGPVNEWKILDCIDVHKLLETIFGDQDVANSWKA RCAEYFPYSTYFEGIKSASAAYCSVANSLEDSSENGIVANAQMKSADGETCTLNGTVHIV DELSNLSIR

Transcript Sequence

Transcript ID	Os01t0617500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:24534950:24546684:-1 gene:Os01g0617500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0617500-01);Similar to predicted protein. (Os01t0617500-02)
Sequence	AGTCCACCCTCCGCTCCGCCTCGCGCCTCCAAAAACCCTTCCCATCCTCCTCCTCCTCCC CCTAGGGTTCCCGTCGCCGCCCCGCGCCGCCGCGGCCGCCATGGGCTCCTCGCTCCCGGC CAAGGAGGCCAACCTCTTCAAAGTCATCGTCAAATCCTATGAGACAAAGCAATATAAGAA GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGAAACCTTATC AATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGAAGCATATGAACTTGTTCG CCGTGGATTGAAGAATGATCTGAAGAGTCATGTGTGCTGGCATGTCTATGGCTTGCTTTA TCGATCAGACAGAGAATACAGAGAAGCCATAAAATGTTACAGAAATGCTCTGAGGATTGA TCCAGATAACATAGAAATTCTACGTGACCTGTCACTTCTCCAGGCACAAATGAGGGACTT GTCTGGCTTTGTTGAGACTAGGCAACAACTTTTAACACTGAAGCCAAATCACCGCATGAA CTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAATTCTTCCAAGGCAATAGAAGT ATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCCCCAGAGAATGAGCGATATGA ACACAGTGAAATGCTTCTGTATAAGATTTCATTGTTCGAGGAATGTGGGATGCTGGACAG AGCTCTTGAGGAGATGCAGAAGAAGGAGAGCAAAATTGTTGACAAGCTATCGTTCAAAGA ACAAATGGCCTGCATTTTGTTGAAACTTGGCCGCTTTGAGGAGGCTGAGAAAACATATAG GTCCCTGCTTTTCATGAATCCTGATAACTACAAGTATTTCATAGCTGTTCAAAAGTGCCT TGGTCTATACTCAGAGAATGGTCAGTATTCCACTGATGATGTTGACCGATTATGCGAATT GTATAGCTCACTTAAAGAAGAATATGGTTGGTCATCTGCTGTTAAGCGCATACCCCTTGA TTTCCTGGAAGGAGAGAAATTTCAGGAGGCAGCAGATAATTATGTCAGACCCCTATTAAC CAAGGGAGTACCATCACTATTTTCTGATCTTAGCCCATTGTACGAGCAACCTGGCAAGGC AAACATATTGGAGGAATTGTTTCTTAAGCTAGAACGTTCAATTAGGACTTCAGGATGCTT CCCAGGAAGTTCGCATACGGAACCTCCATCCACACTCCTGTGGACTCTGTTTTTGATCTC TCAGCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTAT TTCACACACGCCAACTGTAATTGATTTATACTCAATAAAGGGGAAGATATTGCAGCATGC TGGCAATTTCTCAGCGGCTGCAGCATTGGCGGATGAAGCTAGGTCAATGGATCTCGCTGA TCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGGTTGGTCTAGC TGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAGCACAATAATCTCCATGACAT GCAGTGCATGTGGTATGAGCTTGCTTCTGGTGAGAGTTACTATCGTCAAGGTGATCTCGG CAGGGCTCTCAAAAATTTCTTGGCTGTTGAGAAGCATTATGCTGACATGACTGAAGATCA ATTTGACTTCCATTCGTATTGCTTACGGAAAATGACACTAAGGGCATATGTTTCTATGCT GAAGTTTCAAGATCGCTTGCATGCTCATGAATATTTCCACAAGGCTGCAGCAGGAGCTAT CAGGTGTTATATGAAATTGCATGATTCACCATCAAAATCATCCACTGAGGAGAATGATGA AATGTCGAAATTGCCACCTGCTCAGAGGAAGAAACTGAGACAAAAACAGAAAAAGGCAGA AGCTCGTGCCAAAAGGGAGGCTGAAGAGAAACAGGAGGATGAGACAACTTCATCTCACAC TTCAAAATCTGGGAAGAAACAAAACGCAAGACCAGTTGATTTGGATCCACATGGTGAAAA GTTAGTGCAGATTGAAAACCCACTTGCTGAAGGAACAAAGTATTTGAAGCTTCTGCAGAA TAACTCATCAGACTCGTTGGAAACTCATACACTTTCATTTGAACTCAACATGAGAAAACA AAAGATTTTACTTGCTTTTCAGGCAGTCAAGCAGCTCATTAAGTTGGATGAAAATAGCCC TGACAGTCATCGTTGTTTGATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGG GACAGATTCTGAAAAGCTAATTTGGAATGTTTTGGAAGCTGAGCGTCCAGATTTAAGGCA GTTGCATGGGAAGTCTCTTGTTGAAGTAAATAGAAGTTTCCTTGAAAAGCACAGTGCTTC TTTGACGCACAGAGCAGCAGCAGCTGAAATGATGTACCTCTTGGAACCAGATAAGAAGCT TGAGGCAATCAAATTAATTGAAGATTCAGTAAACAGCACAGCATCAGGAAACAGTGTGCT TGGTCCTGTGAATGAATGGAAAATTCTAGACTGTATTGATGTTCACAAATTGCTGGAGAC AATCTTTGGTGACCAGGATGTGGCAAACAGTTGGAAGGCACGATGCGCTGAATATTTCCC ATACTCAACCTACTTTGAAGGCATTAAGAGTGCTAGTGCTGCCTATTGTTCTGTTGCCAA TAGTCTTGAGGATTCATCAGAAAATGGAATTGTAGCAAATGCGCAAATGAAATCAGCAGA CGGAGAAACATGCACTTTGAATGGAACTGTGCATATTGTGGATGAACTGAGCAATCTAAG CATTAGGTAATGCGCCATAAGCAGGGTACCTGGTTACAGCTGGAACAGAACACATTTTAG AGCCAGTGCTTAATTAACCAAGAGTGCACACAGAAGACGAGAGATCTAGAGGCGAAGTGC TAGACTGCAAAGAGGAACTTCTTGATGATTTTCATTTGGAATATATTATTGATTGGGAGC TGAGATCTCTTCGGTCTCTGGTGATTTTCTGAGTTCCAGCTTGTACCTTTCGTTGTCATC TTGTAGATGGTGAAAGGATAACCTTTCATCTCCAGTTCCCATGAGGCTTTGCCGGGGTTT GCTGCCTGGCTACATCAGGGCGTGACATTCTTTTGAAGCAGCGGACCTTGAATTTGTTGC ACGGTTGGTTTTTTCAGTCGCTCTCCTTGGACTGCAAAAATTTTGGCATAAAACAGGTAT AATCTCAAAAACTTTTTTTTTTGTGATATCATGAATATGTTCTTTGCAATAGTTGGATGT ACTTGGGGTTGCCCTACCCCTCATTTTGCAACTTTTGATCCTTGGCGCTGTAAAATAGTT AACTCGTGTGGGACATTGATATTGTATTCCCCTTGTCCTGACAAATAATGGCCATTGTTA ACC