Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g008210.3.1
CDS Infomation	breast cancer associated RING 1 (AHRD V3.3 *** AT1G04020.1)
Sequence	ATGGCGGCGGAGGCTCAAAGCATTGCTCGGTTTCTCAACCCATTGGCTTTTCATATTCAG AAATTGGGTCTTGAGCTCAAATGCCCTCTTTGCTTAAACTTGCTGACTAAACCTATGTTG CTTCCCTGTGACCATATTTTTTGCAACTTTTGTGTTCCGAGCTCGACCCAAGTTCAATGT GAATGCCCTTTATGCAAACATCAATATGTTGATCAAGAAATTAGAGCAGTGCCTCATATG GAGAGTATGATATCCATATTTAGAAGCTTAGATGCTACTTGCAATGCTAAAGTCTTTCAA TTCCAATCTCCCGATGCTGGAAGACCACTAGAGCAGTCACCCGTTTCTGTTAATGCTGAC AAATCAAGAAATGAGCAAACTGTCAAAGCCACAATAAGAAACAATGATCCGAGCAAGGAG ATTCAAAGGCACAACGAACATGGAATGCCATGGAATGTTGTGAATCATTTGAGTGTCTTG CCTTCTTCTGACAGGAAGAAAGACTCGAAAAATGATGGGTATAACGCAGAGGAAATAGAT TTGATTCAATTTCAACAGCAGTCACCAGGCAGTGCTCATTCATCAGACAGCAACAAAGAT ATTGTTAAAGAGACCAGTGAACTGAGAGTTATGAAAACCAATGCTGCAAAGAGGCTTGTA GAAGATAGCTCGGATGTGGTTCCATTTCTGAAAAAAGAAGATAGCTTTGAAGGTTTAATG CACCACACAGCTATGCATGAAAATGTGTTTCATGAAAGGGATGTGAAGAGACAAAAGAAA CTAAGCTATGGATTGCCAGAGATGGCCTTGCAGAGTCATGATCATAATCAACAAAGAGAG TCTTGTTCAAGAATAATTGCCAACTCTGACTGCAACTTGACATGCAAATTGAGTGAATCT TCTTTTGTTGCTCATCCACAAGAAGTTTCAGATCAACATCTTCTGGAAGGCAGTGCTTGT GCTTTCTGCCTCAAATCTAAGATAACAGAGGGAACTGGACCAATGCTGCACTATGCAAAT GGCAGGGAGGTGGTGGGAGATGCCACTTCACTTTCAAAAGCCATACCTGTGCATATGAAA TGTATTGACTGGGCGCCTCAAGTATATTATGATGGAGAGATCATAAAAAATTTGGAGGCT GAATTGGCAAGAGCTTCAAAACTCAAGTGTAGTGGTTGTGGCCTAAAGGGTGCTGCTCTT GGCTGCCTTGTGAAGTCTTGTCGGAGGAGTTACCATATGCCCTGTGCATTTGAAATGCAG AACTGCCGTTGGGATACTGACAACTTCGTCATGCTGTGTCCGAGTCACAAATCAGTTAAA TTTCCTAGTGAAAAGTCAAAGTCTAGGAAGCGTGCCAATATTGAAGCACGTACAGAACCT GCTCCCATAACATCCGAGCGATTGAATTTTTGGGCAACATCGTCAGATGGACCAAAAGAA TGGGTTCTATGCGGATCTGCTCTATCCTCAGAAGAGAAGTATATGTTGGTCAAGTTTGCT AATGTGTGTGGCGCAACTGTGTGCAAGTCTTGGAACCCAAGTGTCACTCATGTCATTGCA GCAACAGATGAAAAGGGTGCATGCACCAGAACACTGAAAGTTCTCATGGCAATTTTGGGT GGAAAATGGATCCTAACAATTGATTGGATAAAAGCCTGTGTTCAAGAAAATTATCCTGTC AATGAAGAGGCTTATGAATTAAGCCTGGACAATCATGGCTGTTTTGGAGGTCCCAAAATT GGTAGATTAAGGGCTTCATCCAATGCACCTAAGCTATTTGATGGTTTGAAGTTTTATCTG AGTGGAGATTATGTCCCAGCTTACAGAACTGACCTATTAGATTTAGTTGAAAATGCTGGA GGTTCCATAATCCACACTAAGGAACAGTTGATTTCCCAGACTGTTGCTACACAAACAGCT AGCTCAGCTTGTCTAGTTGTTTATAGCAGTGATCCTCCACGTGGTTGTGAATTCGGGGAA GAAAGAAACATTTTGCTTCAACGACAAGCAAATGCTGAGGAACTGGCCAAGCCACTTGGT TGTCAGGTCATTCAGCATACATGGATTCTAGAGTCTATTGCTACATGTAAATTAGTGCCT TTCTGCTGA

Peptide Sequence

PEP ID	Solyc06g008210.3.1
PEP Infomation	breast cancer associated RING 1 (AHRD V3.3 *** AT1G04020.1)
Sequence	MAAEAQSIARFLNPLAFHIQKLGLELKCPLCLNLLTKPMLLPCDHIFCNFCVPSSTQVQC ECPLCKHQYVDQEIRAVPHMESMISIFRSLDATCNAKVFQFQSPDAGRPLEQSPVSVNAD KSRNEQTVKATIRNNDPSKEIQRHNEHGMPWNVVNHLSVLPSSDRKKDSKNDGYNAEEID LIQFQQQSPGSAHSSDSNKDIVKETSELRVMKTNAAKRLVEDSSDVVPFLKKEDSFEGLM HHTAMHENVFHERDVKRQKKLSYGLPEMALQSHDHNQQRESCSRIIANSDCNLTCKLSES SFVAHPQEVSDQHLLEGSACAFCLKSKITEGTGPMLHYANGREVVGDATSLSKAIPVHMK CIDWAPQVYYDGEIIKNLEAELARASKLKCSGCGLKGAALGCLVKSCRRSYHMPCAFEMQ NCRWDTDNFVMLCPSHKSVKFPSEKSKSRKRANIEARTEPAPITSERLNFWATSSDGPKE WVLCGSALSSEEKYMLVKFANVCGATVCKSWNPSVTHVIAATDEKGACTRTLKVLMAILG GKWILTIDWIKACVQENYPVNEEAYELSLDNHGCFGGPKIGRLRASSNAPKLFDGLKFYL SGDYVPAYRTDLLDLVENAGGSIIHTKEQLISQTVATQTASSACLVVYSSDPPRGCEFGE ERNILLQRQANAEELAKPLGCQVIQHTWILESIATCKLVPFC*

Transcript Sequence

Transcript ID	Solyc06g008210.3.1
Transcript Infomation	breast cancer associated RING 1 (AHRD V3.3 *** AT1G04020.1)
Sequence	ATGGCGGCGGAGGCTCAAAGCATTGCTCGGTTTCTCAACCCATTGGCTTTTCATATTCAG AAATTGGGTCTTGAGCTCAAATGCCCTCTTTGCTTAAACTTGCTGACTAAACCTATGTTG CTTCCCTGTGACCATATTTTTTGCAACTTTTGTGTTCCGAGCTCGACCCAAGTTCAATGT GAATGCCCTTTATGCAAACATCAATATGTTGATCAAGAAATTAGAGCAGTGCCTCATATG GAGAGTATGATATCCATATTTAGAAGCTTAGATGCTACTTGCAATGCTAAAGTCTTTCAA TTCCAATCTCCCGATGCTGGAAGACCACTAGAGCAGTCACCCGTTTCTGTTAATGCTGAC AAATCAAGAAATGAGCAAACTGTCAAAGCCACAATAAGAAACAATGATCCGAGCAAGGAG ATTCAAAGGCACAACGAACATGGAATGCCATGGAATGTTGTGAATCATTTGAGTGTCTTG CCTTCTTCTGACAGGAAGAAAGACTCGAAAAATGATGGGTATAACGCAGAGGAAATAGAT TTGATTCAATTTCAACAGCAGTCACCAGGCAGTGCTCATTCATCAGACAGCAACAAAGAT ATTGTTAAAGAGACCAGTGAACTGAGAGTTATGAAAACCAATGCTGCAAAGAGGCTTGTA GAAGATAGCTCGGATGTGGTTCCATTTCTGAAAAAAGAAGATAGCTTTGAAGGTTTAATG CACCACACAGCTATGCATGAAAATGTGTTTCATGAAAGGGATGTGAAGAGACAAAAGAAA CTAAGCTATGGATTGCCAGAGATGGCCTTGCAGAGTCATGATCATAATCAACAAAGAGAG TCTTGTTCAAGAATAATTGCCAACTCTGACTGCAACTTGACATGCAAATTGAGTGAATCT TCTTTTGTTGCTCATCCACAAGAAGTTTCAGATCAACATCTTCTGGAAGGCAGTGCTTGT GCTTTCTGCCTCAAATCTAAGATAACAGAGGGAACTGGACCAATGCTGCACTATGCAAAT GGCAGGGAGGTGGTGGGAGATGCCACTTCACTTTCAAAAGCCATACCTGTGCATATGAAA TGTATTGACTGGGCGCCTCAAGTATATTATGATGGAGAGATCATAAAAAATTTGGAGGCT GAATTGGCAAGAGCTTCAAAACTCAAGTGTAGTGGTTGTGGCCTAAAGGGTGCTGCTCTT GGCTGCCTTGTGAAGTCTTGTCGGAGGAGTTACCATATGCCCTGTGCATTTGAAATGCAG AACTGCCGTTGGGATACTGACAACTTCGTCATGCTGTGTCCGAGTCACAAATCAGTTAAA TTTCCTAGTGAAAAGTCAAAGTCTAGGAAGCGTGCCAATATTGAAGCACGTACAGAACCT GCTCCCATAACATCCGAGCGATTGAATTTTTGGGCAACATCGTCAGATGGACCAAAAGAA TGGGTTCTATGCGGATCTGCTCTATCCTCAGAAGAGAAGTATATGTTGGTCAAGTTTGCT AATGTGTGTGGCGCAACTGTGTGCAAGTCTTGGAACCCAAGTGTCACTCATGTCATTGCA GCAACAGATGAAAAGGGTGCATGCACCAGAACACTGAAAGTTCTCATGGCAATTTTGGGT GGAAAATGGATCCTAACAATTGATTGGATAAAAGCCTGTGTTCAAGAAAATTATCCTGTC AATGAAGAGGCTTATGAATTAAGCCTGGACAATCATGGCTGTTTTGGAGGTCCCAAAATT GGTAGATTAAGGGCTTCATCCAATGCACCTAAGCTATTTGATGGTTTGAAGTTTTATCTG AGTGGAGATTATGTCCCAGCTTACAGAACTGACCTATTAGATTTAGTTGAAAATGCTGGA GGTTCCATAATCCACACTAAGGAACAGTTGATTTCCCAGACTGTTGCTACACAAACAGCT AGCTCAGCTTGTCTAGTTGTTTATAGCAGTGATCCTCCACGTGGTTGTGAATTCGGGGAA GAAAGAAACATTTTGCTTCAACGACAAGCAAATGCTGAGGAACTGGCCAAGCCACTTGGT TGTCAGGTCATTCAGCATACATGGATTCTAGAGTCTATTGCTACATGTAAATTAGTGCCT TTCTGCTGATAAATGGGATTTAACCTACAAGGTTTATTAGTTATATGTTATGAATAGTAC TGCTAATTAAGTCTTATTTGTTTGATAGATTAGAACAAATAATCTTGTTTGTCTATGGCT GTTGTACACAACACTTTCTACATCTAAGCAATATTGTGAATTTTTTGCTACAAAGTGTCA CAACCAAAAGTGGTTACTCTTTGAAGTAAATACTTGTGTTTATGTTCATCTTAGAAAGCA GAAGATTGTATACTCAGGCCATTTCATGTCTTGTTCATAATCACAGAAAAATTCAAGTTT T