Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Perilla frutescens , Perilla, Shiso, Egoma, Lemon egoma, Beefsteak plant , シソ, エゴマ, レモンエゴマ

Perilla frutescens

Genome Assembly ID:t48386.G004

Sequence Name:Pfru_SekihoH2_1.0

Details of the Assembled Genome Sequences

Assembly Name Pfru_SekihoH2_1.0 Biological Sample SekihoS8 (Red perilla)
Number of Sequences 20 Number of Chromosomes 2n = 4x = 40
Total Length (bp) 1,231,843,663 N50 Length (bp) 63,607,629
Number of Genes 62,895 Number of Genes Source File Pfru_SekihoH2_helixer.pep.fa
Number of Genes Annotated by Hayai-annotation 62,895 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Hifi Read Depth 29.1x
Assembly Method Hifiasm, Ragoo against Pfru_yukari_1.0 Estimated Genome Size (Mb) 1,250
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Sachiko Isobe (Kazusa DNA Res Inst) Data Source Plant GARDEN
DOI/PMID Data Source URL https://plantgarden.jp/
BUSCO Version NA BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.4%[S:9.7%,D:89.7%],F:0.2%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:98.7%[S:9.7%,D:89.0%],F:0.7%,M:0.6%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format