Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Perilla frutescens var. frutescens , Egoma, Perilla mint, Oilseed perilla, Beefsteak plant , エゴマ

Perilla frutescens

Genome Assembly ID:t48386.G001

Sequence Name:ICMM_Pfru_2.0

Details of the Assembled Genome Sequences

Assembly Name ICMM_Pfru_2.0 Biological Sample var. frutescens, cv. PF40
Number of Sequences 1,465 Number of Chromosomes 2n = 4x = 40
Total Length (bp) 1,234,370,464 N50 Length (bp) 62,644,896
Number of Genes 38,941 Number of Genes Source File GCA_019511825.2_ICMM_Pfru_2.0_protein.faa
Number of Genes Annotated by Hayai-annotation 38,941 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Sequel I Read Depth 54.5x
Assembly Method Canu v1.5 Estimated Genome Size (Mb) 1,240
Sequencing Method Comments NA Comments Synonym: Ocimum frutescens
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Shilin Chen (China Academy of Chinese Medical Sciences) Data Source NCBI
DOI/PMID 10.1038/s41467-021-25681-6 Data Source URL https://www.ncbi.nlm.nih.gov/
BUSCO Version 5.8.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.1%[S:5.0%,D:94.1%],F:0.5%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:85.9%[S:23.9%,D:62.1%],F:2.2%,M:11.9%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format