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Oryza sativa

Assembly Name:IRGSP-1.0

Gene File:Oryza_sativa.IRGSP-1.0.pep.all.fa.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
Os04t0684500-01
PEP
Os04t0684500-01
Position on the Genome Chromosome 4
Start Position 34958612
End Position 34970010
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00469403
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pentatricopeptide repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
H0913C04.4 protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13041,PF01535,PF12854,PF13812,PF00076
Pfam Description Details
InterPro ID
IPR002885,IPR000504,IPR011990,IPR012677,IPR035979
InterPro Description Details
GO ID
GO:0003723
GO Description Details
GOslim ID
GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Oryza sativa
Family Poaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , subsp. japonica, cv. Nipponbare , Poaceae , イネ科 , Oryza , イネ属 , Rice, Indica rice, Japonica rice, Nagina-22, N22 , イネ, イネ インディカ亜種, イネ ジャポニカ亜種, イネaus亜種N22 Indica rice , イネ ジャポニカ亜種

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
H0913C04.4 protein
OrthoDB(1 item)
21864at33090
Pentatricopeptide repeat
Pfam(5 items)
 
PPR repeat family
 
PPR repeat
 
PPR repeat
 
Pentatricopeptide repeat domain
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(5 items)
 
Pentatricopeptide repeat
 
RNA recognition motif domain
 
TPR-like_helical_dom_sf
 
Nucleotide-bd_a/b_plait_sf
 
RBD_domain_sf
Gene ontology(1 item)
GO slim(1 item)
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.