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Oryza sativa

Assembly Name:IRGSP-1.0

Gene File:Oryza_sativa.IRGSP-1.0.pep.all.fa.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
Os02t0181900-01
PEP
Os02t0181900-01
Position on the Genome Chromosome 2
Start Position 4567630
End Position 4573049
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319906
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Clp, N-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Chaperone protein ClpB3, mitochondrial
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
Pfam ID
PF17871,PF02861,PF10431,PF00004,PF07724
Pfam Description Details
InterPro ID
IPR036628,IPR017730,IPR028299,IPR004176,IPR019489,IPR003593,IPR001270,IPR027417,IPR003959,IPR018368,IPR041546
InterPro Description Details
GO ID
GO:0034605,GO:0016887,GO:0005737,GO:0006986,GO:0005524,GO:0005739,GO:0042026
GO Description Details
GOslim ID
GO:0006457,GO:0005739,GO:0050896,GO:0005737,GO:0000166,GO:0016787,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Oryza sativa Japonica Group
Family Poaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , subsp. japonica, cv. Nipponbare , Poaceae , イネ科 , Oryza , イネ属 , Rice, Indica rice, Japonica rice, Nagina-22, N22 , イネ, イネ インディカ亜種, イネ ジャポニカ亜種, イネaus亜種N22 Indica rice , イネ ジャポニカ亜種

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(3 items)
 
Chaperone protein ClpB3, mitochondrial
 
ATP-dependent Clp protease ATP-binding subunit ClpB
ko:K03695
 
OrthoDB(1 item)
24254at33090
Clp, N-terminal
Pfam(5 items)
 
AAA_lid_9
 
Clp amino terminal domain, pathogenicity island component
 
C-terminal, D2-small domain, of ClpB protein
 
ATPase family associated with various cellular activities (AAA)
 
AAA domain (Cdc48 subfamily)
InterPro(11 items)
 
Chaperonin_ClpB
 
Clp, N-terminal
 
Clp ATPase, C-terminal
 
AAA+ ATPase domain
 
P-loop_NTPase
 
ATPase, AAA-type, core
 
ClpA/ClpB_AAA_lid
Gene ontology(7 items)
BP
cellular response to heat
MF
ATPase activity
BP
response to unfolded protein
CC
mitochondrion
BP
protein refolding
GO slim(7 items)
BP
protein folding
CC
mitochondrion
BP
response to stimulus
MF
nucleotide binding
MF
hydrolase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.