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アセンブル , シーケンス , Assemble , Sequence , Hordeum vulgare subsp. spontaneum , Barley, Wild barley (ssp. spontaneum) , オオムギ, シジョウオオムギ, オオムギ野生種 (spontaneum亜種)

Hordeum vulgare

Genome Assembly ID:t4513.G005

Sequence Name:ASM2978338v1

Details of the Assembled Genome Sequences

Assembly Name ASM2978338v1 Biological Sample EC-N1
Number of Sequences 3,510 Number of Chromosomes 2n = 2x = 14
Total Length (bp) 5,193,531,093 N50 Length (bp) 641,112,760
Number of Genes 38,736 Number of Genes Source File EC-N1_pseudomolecules_V1.high_confidence.pep.fasta.gz
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Oxford Nanopore, BioNano optical map, Hi-C Read Depth 285.35 Gb (ONT), 311.01 Gb (BioNano), 514.5 Gb (Hi-C)
Assembly Method NextDenovo, BioNano Solve package v3.3, LACHESIS, Mummer v4.1 Estimated Genome Size (Mb) 4,400
Sequencing Method Comments NA Comments Hybrid scaffolds were assembled from ONT assembly and BioNano genome maps.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Wenying Zhang (Yangtze University) Data Source NCBI; Ffigshare
DOI/PMID 10.1038/s41597-023-02434-2 Data Source URL https://www.ncbi.nlm.nih.gov/assembly/GCA_029782615.1/?shouldredirect=false
https://figshare.com/articles/dataset/Annotation_of_two_barley_genome/23501529/1?file=41218167
BUSCO Version 5.8.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.4%[S:80.7%,D:16.7%],F:0.9%,M:1.7%,n:1614 BUSCO Gene (pep/cds) C:95.0%[S:83.1%,D:11.9%],F:1.6%,M:3.3%,n:1614

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