# Assembly Statistics Report # Assembly name: ASM2978338v1 # Organism name: Hordeum vulgare (barley) # Isolate: wild type N # Taxid: 4513 # BioSample: SAMN33865289 # BioProject: PRJNA947680 # Submitter: Yangtze University # Date: 2023-04-19 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAROYZ01 # Assembly method: SOAPdenovo v. 1.0 # Expected final version: yes # Genome coverage: 60x # Sequencing technology: Oxford Nanopore PromethION # GenBank assembly accession: GCA_029783385.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_029783985.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 5193531093 all all all all spanned-gaps 3890 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 3510 all all all all scaffold-N50 641112760 all all all all scaffold-L50 4 all all all all scaffold-N75 618953218 all all all all scaffold-N90 669197 all all all all contig-count 7400 all all all all contig-N50 1585733 all all all all contig-L50 906 all all all all total-gap-length 141531455 all all all all molecule-count 7 all all all all top-level-count 3510 all all all all component-count 3510 all all all all gc-perc 44 Primary Assembly all all all total-length 5193531093 Primary Assembly all all all ungapped-length 5051999638 Primary Assembly all all all scaffold-count 3510 Primary Assembly all all all scaffold-N50 641112760 Primary Assembly all all all spanned-gaps 3890 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 44 Primary Assembly all all assembled-molecule total-length 4471941444 Primary Assembly all all assembled-molecule ungapped-length 4346445411 Primary Assembly all all assembled-molecule scaffold-count 7 Primary Assembly all all assembled-molecule scaffold-N50 641112760 Primary Assembly all all assembled-molecule spanned-gaps 3770 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 44 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 721589649 Primary Assembly na na unplaced-scaffold ungapped-length 705554227 Primary Assembly na na unplaced-scaffold scaffold-count 3503 Primary Assembly na na unplaced-scaffold scaffold-N50 405207 Primary Assembly na na unplaced-scaffold spanned-gaps 120 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 43.5 Primary Assembly 1H Chromosome all total-length 560836502 Primary Assembly 1H Chromosome all ungapped-length 540324654 Primary Assembly 1H Chromosome all scaffold-count 1 Primary Assembly 1H Chromosome all scaffold-N50 560836502 Primary Assembly 1H Chromosome all spanned-gaps 492 Primary Assembly 1H Chromosome all unspanned-gaps 0 Primary Assembly 1H Chromosome all gc-perc 44 Primary Assembly 1H Chromosome assembled-molecule total-length 560836502 Primary Assembly 1H Chromosome assembled-molecule ungapped-length 540324654 Primary Assembly 1H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1H Chromosome assembled-molecule scaffold-N50 560836502 Primary Assembly 1H Chromosome assembled-molecule spanned-gaps 492 Primary Assembly 1H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1H Chromosome assembled-molecule gc-perc 44 Primary Assembly 1H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2H Chromosome all total-length 725682262 Primary Assembly 2H Chromosome all ungapped-length 700781488 Primary Assembly 2H Chromosome all scaffold-count 1 Primary Assembly 2H Chromosome all scaffold-N50 725682262 Primary Assembly 2H Chromosome all spanned-gaps 603 Primary Assembly 2H Chromosome all unspanned-gaps 0 Primary Assembly 2H Chromosome all gc-perc 44 Primary Assembly 2H Chromosome assembled-molecule total-length 725682262 Primary Assembly 2H Chromosome assembled-molecule ungapped-length 700781488 Primary Assembly 2H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2H Chromosome assembled-molecule scaffold-N50 725682262 Primary Assembly 2H Chromosome assembled-molecule spanned-gaps 603 Primary Assembly 2H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2H Chromosome assembled-molecule gc-perc 44 Primary Assembly 2H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3H Chromosome all total-length 649336094 Primary Assembly 3H Chromosome all ungapped-length 625651058 Primary Assembly 3H Chromosome all scaffold-count 1 Primary Assembly 3H Chromosome all scaffold-N50 649336094 Primary Assembly 3H Chromosome all spanned-gaps 556 Primary Assembly 3H Chromosome all unspanned-gaps 0 Primary Assembly 3H Chromosome all gc-perc 44 Primary Assembly 3H Chromosome assembled-molecule total-length 649336094 Primary Assembly 3H Chromosome assembled-molecule ungapped-length 625651058 Primary Assembly 3H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3H Chromosome assembled-molecule scaffold-N50 649336094 Primary Assembly 3H Chromosome assembled-molecule spanned-gaps 556 Primary Assembly 3H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3H Chromosome assembled-molecule gc-perc 44 Primary Assembly 3H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4H Chromosome all total-length 655003473 Primary Assembly 4H Chromosome all ungapped-length 642083112 Primary Assembly 4H Chromosome all scaffold-count 1 Primary Assembly 4H Chromosome all scaffold-N50 655003473 Primary Assembly 4H Chromosome all spanned-gaps 575 Primary Assembly 4H Chromosome all unspanned-gaps 0 Primary Assembly 4H Chromosome all gc-perc 44 Primary Assembly 4H Chromosome assembled-molecule total-length 655003473 Primary Assembly 4H Chromosome assembled-molecule ungapped-length 642083112 Primary Assembly 4H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4H Chromosome assembled-molecule scaffold-N50 655003473 Primary Assembly 4H Chromosome assembled-molecule spanned-gaps 575 Primary Assembly 4H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4H Chromosome assembled-molecule gc-perc 44 Primary Assembly 4H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5H Chromosome all total-length 618953218 Primary Assembly 5H Chromosome all ungapped-length 607748961 Primary Assembly 5H Chromosome all scaffold-count 1 Primary Assembly 5H Chromosome all scaffold-N50 618953218 Primary Assembly 5H Chromosome all spanned-gaps 478 Primary Assembly 5H Chromosome all unspanned-gaps 0 Primary Assembly 5H Chromosome all gc-perc 44 Primary Assembly 5H Chromosome assembled-molecule total-length 618953218 Primary Assembly 5H Chromosome assembled-molecule ungapped-length 607748961 Primary Assembly 5H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5H Chromosome assembled-molecule scaffold-N50 618953218 Primary Assembly 5H Chromosome assembled-molecule spanned-gaps 478 Primary Assembly 5H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5H Chromosome assembled-molecule gc-perc 44 Primary Assembly 5H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6H Chromosome all total-length 621017135 Primary Assembly 6H Chromosome all ungapped-length 600613589 Primary Assembly 6H Chromosome all scaffold-count 1 Primary Assembly 6H Chromosome all scaffold-N50 621017135 Primary Assembly 6H Chromosome all spanned-gaps 553 Primary Assembly 6H Chromosome all unspanned-gaps 0 Primary Assembly 6H Chromosome all gc-perc 44 Primary Assembly 6H Chromosome assembled-molecule total-length 621017135 Primary Assembly 6H Chromosome assembled-molecule ungapped-length 600613589 Primary Assembly 6H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6H Chromosome assembled-molecule scaffold-N50 621017135 Primary Assembly 6H Chromosome assembled-molecule spanned-gaps 553 Primary Assembly 6H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6H Chromosome assembled-molecule gc-perc 44 Primary Assembly 6H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6H Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7H Chromosome all total-length 641112760 Primary Assembly 7H Chromosome all ungapped-length 629242549 Primary Assembly 7H Chromosome all scaffold-count 1 Primary Assembly 7H Chromosome all scaffold-N50 641112760 Primary Assembly 7H Chromosome all spanned-gaps 513 Primary Assembly 7H Chromosome all unspanned-gaps 0 Primary Assembly 7H Chromosome all gc-perc 44 Primary Assembly 7H Chromosome assembled-molecule total-length 641112760 Primary Assembly 7H Chromosome assembled-molecule ungapped-length 629242549 Primary Assembly 7H Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7H Chromosome assembled-molecule scaffold-N50 641112760 Primary Assembly 7H Chromosome assembled-molecule spanned-gaps 513 Primary Assembly 7H Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7H Chromosome assembled-molecule gc-perc 44 Primary Assembly 7H Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7H Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7H Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7H Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7H Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7H Chromosome unlocalized-scaffold unspanned-gaps 0