84.8568 93.5292 98.8185 80.3709 90.4566 99.3255 UCD10Xv1.1 GCF_002878395.1 Yes University of California, Davis 01-30-2018 14 Primary Assembly GCF_002878405.1 Yes HaploidUnit non-nuclear GCF_001632695.1 No HaploidUnit 4072 Capsicum annuum 101 Mar 14 2022 20220314 Apr 5 2022 9 0 windowmasker ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/4072/101 4.1.4 solanales_odb10 5950 98.9 96.3 2.6 0.3 0.8 99.2 97.4 1.8 0.3 0.5 99.7 96.8 2.9 0.1 0.2 99.3 97.6 1.7 0.2 0.5 98.7 96.4 2.3 0.1 1.2 414 403 1634 4449 8673 1009 5503 2308 371 175 5394 984 2140 23113 304 752 606 273 2273 3089 1684 3186 1273 281 1257 3650 2349 1801 3088 3753 24993 177 7959 178 3 8 5 1 41 63 1 34 574 606 270 2265 3089 1684 3181 1273 281 1256 3650 2349 1801 3088 3712 24930 176 7925 21 1561 74 644 5202 687 2334 46 117 881 1904 1572 589 1978 4327 57 3734 21 1561 74 644 5202 687 2334 46 117 881 1904 1572 589 1978 4327 57 3734 48341 1 5746 2 9931 2490 0 10390 32202 678 1237 617 452 51276 10 2717 2392 50942 334 249 44684 6127 1735 2143 20361 13 30 26 19566 0 0 16251 0 26 2 0 0 0 2 0 0 2 0 0 51555 675 2442 2057 51221 334 175 44684 6209 1882 694 1464 629 451 48341 1 5746 2 9931 2490 0 10390 32202 0 678 1237 617 452 51276 10 2717 2392 50942 334 249 44684 6127 0 1735 2143 20361 13 30 26 19566 0 0 16251 0 0 26 2 0 0 0 2 0 0 2 0 0 0 51555 675 2442 2057 51221 334 175 44684 6209 1882 694 1464 629 451 47985 0 5744 2 9931 2488 0 10316 31923 678 1234 617 452 51276 10 2717 2392 50942 334 249 44684 6127 1735 2143 20287 13 30 26 19566 0 0 16251 0 26 2 0 0 0 2 0 0 2 0 0 51276 675 2440 2049 50942 334 175 44684 6209 1874 694 1461 629 451 1 50 1.7063 1 1 80 5.88613 4 71637 61 52316 1901.36 1596 51555 90 16371 1298.66 1056 42593 61 325385 5426.09 2956 5724 212 16749 1241.96 988 5720 212 16749 1241.73 987 4 878 2256 1565.75 1886 9829 82 52316 1872.05 1299 51276 186 21023 1973.14 1687 6437 136 15877 2499.57 2034 934 103 3437 235.059 119 344 98 205 140.558 153 2033 61 218 106.371 107 784 71 93 74.6492 73 1 50 1.7063 1 1 80 5.88613 4 217819 2 52039 374.695 191 167423 30 180793 1281.47 349 71637 61 52316 1901.36 1596 51555 90 16371 1298.66 1056 185647 3 19238 345.595 179 42036 2 52039 471.548 223 42593 61 325385 5426.09 2956 146542 30 180793 1183.9 326 30400 30 66929 1777.81 482 5724 212 16749 1241.96 988 5720 212 16749 1241.73 987 4 878 2256 1565.75 1886 9829 82 52316 1872.05 1299 51276 186 21023 1973.14 1687 6437 136 15877 2499.57 2034 934 103 3437 235.059 119 344 98 205 140.558 153 2033 61 218 106.371 107 784 71 93 74.6492 73 1 50 1.7063 1 1 80 5.88613 4 217819 2 52039 374.695 191 167423 30 180793 1281.47 349 71563 61 52316 1903.06 1598 51276 114 16371 1301.97 1059 185647 3 19238 345.595 179 42036 2 52039 471.548 223 42239 61 181788 5443.17 2995 146542 30 180793 1183.9 326 30400 30 66929 1777.81 482 5724 212 16749 1241.96 988 5720 212 16749 1241.73 987 4 878 2256 1565.75 1886 9829 82 52316 1872.05 1299 51276 186 21023 1973.14 1687 6437 136 15877 2499.57 2034 923 114 3392 222.044 119 344 98 205 140.558 153 2033 61 218 106.371 107 721 71 88 74.5659 73 130676813 88.79 159426466 74.82 88.98 73332274 49.83 73766265 82.88 90.65 3195123 99.83 3378924 84.69 90.51 2035386 63.59 2043492 87.4 91.65 3332909 99.75 3511825 84.39 90.59 2178756 65.21 2186951 87.03 91.66 2951005 99.78 3098650 84.76 90.69 1899636 64.23 1906260 87.29 91.71 2252692 99.8 2358410 85.17 90.6 1461191 64.74 1466154 87.51 91.65 2478360 99.81 2605142 85.24 90.61 1577281 63.52 1583425 87.68 91.69 1574643 73.69 1687118 83.51 90.66 1022597 47.86 1027009 86.84 91.72 3628761 99.63 3968126 80.29 90.09 2379045 65.32 2390275 84.35 91.41 2623746 99.79 2815176 83.66 90.54 1679903 63.89 1686847 86.81 91.68 2574819 98.33 2812529 82.65 90.48 1692491 64.64 1701801 86.19 91.68 16568794 87.07 19299491 74.88 88.91 8807286 46.28 8864694 84.32 90.17 21133172 86.97 26211231 74.53 88.79 11358431 46.74 11439803 82.43 90.41 23532583 83.93 30393108 72.67 88.64 13432899 47.91 13529344 81.33 90.37 22224164 91.17 26014015 73.19 88.85 11802955 48.41 11850960 81.45 90.47 22533936 86.38 31182432 71 88.29 11942591 45.78 12026738 80.28 90.38 35748 99.62 47759 82.34 97.22 28242 78.7 28463 96.89 99.21 36358 99.86 42530 96.59 98.95 33584 92.24 34049 98.92 99.64 46.8605 48148 41638 41638 66.73 70.78 13742 13188 13188 73.54 84.16 5198 5115 5115 74.78 84.9 1010 850 850 77.32 84.4 336 330 330 78.27 86.16 14050 13686 13686 73.54 84 UCD10Xv1.1 GCF_002878395.1 Yes 0 336 336 410 336 0 336 336 0 6 325 11 0 1.78571 3.27381 Capsicum annuum, Mandarine (Capsicum annuum, SAMEA2029715) 279221 50 33 39445 Capsicum annuum, LaborSaving213 (Capsicum annuum, SAMEA2029716) 274269 84 34 46768 Capsicum annuum, BlackCluster (Capsicum annuum, SAMEA2029717) 316357 86 34 52974 Capsicum annuum, LaborSaving211 (Capsicum annuum, SAMEA2030433) 361671 82 34 53031 mature fruit (Capsicum annuum, SAMN00265060) 86062 72 57 34815 Stems (Capsicum annuum, SAMN01975406) 46312128 86 18 120360 Leaves (Capsicum annuum, SAMN01975408) 45956096 83 18 129893 Leaves (Capsicum annuum var. glabriusculum, SAMN01975412) 93783926 82 16 131419 Flowers (Capsicum annuum var. glabriusculum, SAMN01975414) 102576604 87 16 139190 Fruits (Capsicum annuum var. glabriusculum, SAMN01975416) 89789270 87 18 138060 Flower buds (Capsicum annuum, SAMN01975419) 44496230 89 17 125187 Open flowers (Capsicum annuum, SAMN01975421) 45928708 85 16 125721 Fruits (Capsicum annuum, SAMN01975423) 37167160 91 19 127169 Fruits (Capsicum annuum, SAMN01975425) 34164510 86 20 121818 Fruits (Capsicum annuum, SAMN01975426) 41015346 92 19 127923 Fruits (Capsicum annuum, SAMN01975428) 38484600 93 19 128349 Fruits (Capsicum annuum, SAMN01975432) 60517760 92 19 139054 Fruits (Capsicum annuum, SAMN01975434) 63661236 91 17 132959 Roots (Capsicum annuum, SAMN01975436) 56450386 87 18 137044 Fruits (Capsicum annuum, SAMN01975438) 64486520 93 20 131149 Fruits (Capsicum annuum, SAMN01975440) 76023478 83 19 134751 Fruits (Capsicum annuum, SAMN01975442) 36691372 90 18 128964 Fruits (Capsicum annuum, SAMN01975444) 37253812 90 18 128750 Fruits (Capsicum annuum, SAMN01975446) 46941144 91 19 136862 Fruits (Capsicum annuum, SAMN01975448) 47066538 91 17 136053 Fruits (Capsicum annuum, SAMN01975450) 45942856 90 18 132648 Fruits (Capsicum annuum, SAMN01975452) 52781062 93 20 131478 Fruits (Capsicum annuum, SAMN01975458) 42903778 92 18 126493 Fruits (Capsicum annuum, SAMN01975460) 73290898 92 18 136566 Fruits (Capsicum annuum, SAMN01975462) 78335408 91 16 139539 Fruits (Capsicum annuum, SAMN01975464) 86264654 90 19 140380 Fruits (Capsicum annuum, SAMN01975465) 72669910 92 18 133015 Fruits (Capsicum annuum, SAMN01975467) 67474764 90 15 136495 Entire fruit (including seeds), 10da anthesis (Capsicum annuum, SAMN02585081) 4049388 82 34 97408 Entire fruit (including seeds), 10da anthesis (Capsicum annuum, SAMN02585082) 3615260 84 34 95653 Entire fruit (including seeds), 40da anthesis (Capsicum annuum, SAMN02585083) 4397488 76 33 99278 Entire fruit (including seeds), 60da anthesis (Capsicum annuum, SAMN02585084) 4320580 83 34 90676 Entire fruit (including seeds), 60da anthesis (Capsicum annuum, SAMN02585085) 4776734 84 34 93584 Entire fruit (including seeds), 20da anthesis (Capsicum annuum, SAMN02585086) 3758546 82 33 97358 Entire fruit (including seeds), 20da anthesis (Capsicum annuum, SAMN02585087) 4749310 82 33 103401 Entire fruit (including seeds), 40da anthesis (Capsicum annuum, SAMN02585088) 4062572 84 34 102200 Leaves (Capsicum annuum, six weeks, SAMN11080689) 14432056 75 37 116001 Leaves (Capsicum annuum, six weeks, SAMN11080690) 17427642 78 37 117267 Leaves (Capsicum annuum, six weeks, SAMN11080691) 15946462 79 37 114360 Leaves (Capsicum annuum, six weeks, SAMN11080692) 18430638 77 37 120337 Leaves (Capsicum annuum, six weeks, SAMN11080693) 16369600 78 37 115101 Leaves (Capsicum annuum, six weeks, SAMN11080694) 16672772 77 37 116240 Leaves (Capsicum annuum, six weeks, SAMN11080695) 17612286 71 37 119804 Leaves (Capsicum annuum, six weeks, SAMN11080696) 17553388 74 37 118375 Leaves (Capsicum annuum, six weeks, SAMN11080697) 20611554 74 37 119683 Leaves (Capsicum annuum, six weeks, SAMN11080698) 16902254 73 38 121801 Leaves (Capsicum annuum, six weeks, SAMN11080699) 16133198 76 38 118650 Leaves (Capsicum annuum, six weeks, SAMN11080700) 17806512 78 39 122455 Leaves (Capsicum annuum, six weeks, SAMN11080701) 19959564 91 37 121091 Leaves (Capsicum annuum, six weeks, SAMN11080702) 17914146 89 36 118484 Leaves (Capsicum annuum, six weeks, SAMN11080703) 19459704 90 37 119007 Leaves (Capsicum annuum, six weeks, SAMN11080704) 18145042 76 37 117813 Leaves (Capsicum annuum, six weeks, SAMN11080705) 19269034 73 37 114389 Leaves (Capsicum annuum, six weeks, SAMN11080706) 17968450 74 37 115972 Leaves (Capsicum annuum, six weeks, SAMN11080707) 16833356 75 36 116799 Leaves (Capsicum annuum, six weeks, SAMN11080708) 16856158 76 36 114618 Leaves (Capsicum annuum, six weeks, SAMN11080709) 16011718 75 36 113439 Leaves (Capsicum annuum, six weeks, SAMN11080710) 16444434 77 36 116926 Leaves (Capsicum annuum, six weeks, SAMN11080711) 16930184 75 37 115297 Leaves (Capsicum annuum, six weeks, SAMN11080712) 17779790 74 36 115774 Leaves (Capsicum annuum, six weeks, SAMN11080713) 18875314 73 35 116428 Leaves (Capsicum annuum, six weeks, SAMN11080714) 17079602 74 35 114060 Leaves (Capsicum annuum, six weeks, SAMN11080715) 14453518 73 35 109484 Leaves (Capsicum annuum, six weeks, SAMN11080716) 16602592 74 37 115318 Leaves (Capsicum annuum, six weeks, SAMN11080717) 16560280 74 37 115463 Leaves (Capsicum annuum, six weeks, SAMN11080718) 17590594 72 37 115728 Leaves (Capsicum annuum, six weeks, SAMN11080719) 17166794 72 38 120484 Leaves (Capsicum annuum, six weeks, SAMN11080720) 17735326 72 39 117708 Leaves (Capsicum annuum, six weeks, SAMN11080721) 15074598 71 38 113442 Leaves (Capsicum annuum, six weeks, SAMN11080722) 16418060 69 35 115679 Leaves (Capsicum annuum, six weeks, SAMN11080723) 15364428 73 36 118737 Leaves (Capsicum annuum, six weeks, SAMN11080724) 16216828 75 36 119635 Leaves (Capsicum annuum, six weeks, SAMN11080725) 17285092 74 37 125554 Leaves (Capsicum annuum, six weeks, SAMN11080726) 16150538 72 38 121316 Leaves (Capsicum annuum, six weeks, SAMN11080727) 14786292 71 38 119813 Leaves (Capsicum annuum, six weeks, SAMN11080728) 14660492 72 38 122075 Leaves (Capsicum annuum, six weeks, SAMN11080729) 13105408 71 39 116587 Leaves (Capsicum annuum, six weeks, SAMN11080730) 15020496 74 39 121662 Leaves (Capsicum annuum, six weeks, SAMN11080731) 15556692 77 39 120873 Leaves (Capsicum annuum, six weeks, SAMN11080732) 15241074 71 39 116946 Leaves (Capsicum annuum, six weeks, SAMN11080733) 13898700 74 39 116870 Leaves (Capsicum annuum, six weeks, SAMN11080734) 14618100 74 39 118958 Leaves (Capsicum annuum, six weeks, SAMN11080735) 14864986 73 39 115835 Leaves (Capsicum annuum, six weeks, SAMN11080736) 14262764 69 38 114232 Leaves (Capsicum annuum, six weeks, SAMN11080737) 17883570 86 35 119302 Leaves (Capsicum annuum, six weeks, SAMN11080738) 19094440 88 35 118685 Leaves (Capsicum annuum, six weeks, SAMN11080739) 18783220 86 34 118370 Leaves (Capsicum annuum, six weeks, SAMN11080740) 18600090 85 36 121026 Leaves (Capsicum annuum, six weeks, SAMN11080741) 19964286 85 35 125710 Leaves (Capsicum annuum, six weeks, SAMN11080742) 19516512 83 34 120428 Leaves (Capsicum annuum, six weeks, SAMN11080743) 20844338 84 37 125124 Leaves (Capsicum annuum, six weeks, SAMN11080744) 19403966 83 37 123918 Leaves (Capsicum annuum, six weeks, SAMN11080745) 17097566 85 37 122569 Leaves (Capsicum annuum, six weeks, SAMN11080746) 18801144 85 37 123485 Leaves (Capsicum annuum, six weeks, SAMN11080747) 20118566 84 37 123564 Leaves (Capsicum annuum, six weeks, SAMN11080748) 19356126 84 37 122916 Leaves (Capsicum annuum, six weeks, SAMN11080749) 18714618 80 36 118977 Leaves (Capsicum annuum, six weeks, SAMN11080750) 18292750 83 36 119111 Leaves (Capsicum annuum, six weeks, SAMN11080751) 19515382 85 37 121149 Leaves (Capsicum annuum, six weeks, SAMN11080752) 18681664 76 37 119978 Leaves (Capsicum annuum, six weeks, SAMN11080753) 20217440 76 37 121934 Leaves (Capsicum annuum, six weeks, SAMN11080754) 18364710 79 37 120357 Leaves (Capsicum annuum, six weeks, SAMN11080755) 18162806 79 37 124347 Leaves (Capsicum annuum, six weeks, SAMN11080756) 19986894 77 38 123408 Leaves (Capsicum annuum, six weeks, SAMN11080757) 18869494 78 38 123713 Leaves (Capsicum annuum, six weeks, SAMN11080758) 22388790 76 38 128548 Leaves (Capsicum annuum, six weeks, SAMN11080759) 15348286 77 39 122711 Leaves (Capsicum annuum, six weeks, SAMN11080760) 18704974 78 39 125779 Leaves (Capsicum annuum, six weeks, SAMN11080761) 18558156 75 37 118638 Leaves (Capsicum annuum, six weeks, SAMN11080762) 17075546 74 38 118741 Leaves (Capsicum annuum, six weeks, SAMN11080763) 16251564 74 38 116856 Leaves (Capsicum annuum, six weeks, SAMN11080764) 16319964 75 38 117730 Leaves (Capsicum annuum, six weeks, SAMN11080765) 16223178 76 38 121601 Leaves (Capsicum annuum, six weeks, SAMN11080766) 16277894 76 38 120581 Leaves (Capsicum annuum, six weeks, SAMN15009898) 14351142 78 35 111701 Leaves (Capsicum annuum, six weeks, SAMN15009899) 13005714 79 36 111800 Leaves (Capsicum annuum, six weeks, SAMN15009900) 11850188 80 36 111224 Leaves (Capsicum annuum, six weeks, SAMN15009901) 14280396 79 36 111307 Leaves (Capsicum annuum, six weeks, SAMN15009902) 15373384 78 36 114264 Leaves (Capsicum annuum, six weeks, SAMN15009903) 14094964 78 36 113682 Leaves (Capsicum annuum, six weeks, SAMN15009904) 14909512 77 36 114213 Leaves (Capsicum annuum, six weeks, SAMN15009905) 14482770 81 36 115700 Leaves (Capsicum annuum, six weeks, SAMN15009906) 12438280 79 36 113299 Leaves (Capsicum annuum, six weeks, SAMN15009907) 15296246 61 35 113794 Leaves (Capsicum annuum, six weeks, SAMN15009908) 17911516 66 35 117296 Leaves (Capsicum annuum, six weeks, SAMN15009909) 19007342 67 35 120160 Leaves (Capsicum annuum, six weeks, SAMN15009910) 17704516 66 37 120363 Leaves (Capsicum annuum, six weeks, SAMN15009911) 15132354 66 37 116123 Leaves (Capsicum annuum, six weeks, SAMN15009912) 16305002 65 36 119180 Leaves (Capsicum annuum, six weeks, SAMN15009913) 15036678 62 35 106586 Leaves (Capsicum annuum, six weeks, SAMN15009914) 17904896 63 35 112692 Leaves (Capsicum annuum, six weeks, SAMN15009915) 17372420 62 34 114912 Leaves (Capsicum annuum, six weeks, SAMN15009916) 19241082 64 35 115716 Leaves (Capsicum annuum, six weeks, SAMN15009917) 18073054 68 34 115293 Leaves (Capsicum annuum, six weeks, SAMN15009918) 16542142 67 34 115120 Leaves (Capsicum annuum, six weeks, SAMN15009919) 18315250 69 35 115013 Leaves (Capsicum annuum, six weeks, SAMN15009920) 16496920 68 35 115138 Leaves (Capsicum annuum, six weeks, SAMN15009921) 18782148 70 35 119583 Leaves (Capsicum annuum, six weeks, SAMN15009922) 16402032 65 35 113685 Leaves (Capsicum annuum, six weeks, SAMN15009923) 15834264 65 35 116917 Leaves (Capsicum annuum, six weeks, SAMN15009924) 18773836 69 35 119708 Leaves (Capsicum annuum, six weeks, SAMN15009925) 19712084 63 36 122833 Leaves (Capsicum annuum, six weeks, SAMN15009926) 19870890 64 36 121533 Leaves (Capsicum annuum, six weeks, SAMN15009927) 18661140 66 36 122603 Leaves (Capsicum annuum, six weeks, SAMN15009928) 18246692 64 35 112947 Leaves (Capsicum annuum, six weeks, SAMN15009929) 16343544 64 35 111490 Leaves (Capsicum annuum, six weeks, SAMN15009930) 16382686 63 35 112367 Leaves (Capsicum annuum, six weeks, SAMN15009931) 17672324 78 37 117111 Leaves (Capsicum annuum, six weeks, SAMN15009932) 14664770 80 37 111572 Leaves (Capsicum annuum, six weeks, SAMN15009933) 18702928 81 37 120948 Leaves (Capsicum annuum, six weeks, SAMN15009934) 18456192 79 37 119352 Leaves (Capsicum annuum, six weeks, SAMN15009935) 19515140 81 37 120366 Leaves (Capsicum annuum, six weeks, SAMN15009936) 15382104 79 37 117946 Leaves (Capsicum annuum, six weeks, SAMN15009937) 16410010 80 38 121974 Leaves (Capsicum annuum, six weeks, SAMN15009938) 17222052 79 38 119643 Leaves (Capsicum annuum, six weeks, SAMN15009939) 18285916 81 38 124329 Leaves (Capsicum annuum, six weeks, SAMN15009940) 18108586 80 39 126798 Leaves (Capsicum annuum, six weeks, SAMN15009941) 15497384 79 39 120582 Leaves (Capsicum annuum, six weeks, SAMN15009942) 15747566 80 40 125448 Leaves (Capsicum annuum, six weeks, SAMN15009943) 16984952 80 39 121282 Leaves (Capsicum annuum, six weeks, SAMN15009944) 16833384 79 39 117505 Leaves (Capsicum annuum, six weeks, SAMN15009945) 15210574 78 38 113489 Leaves (Capsicum annuum, six weeks, SAMN15009946) 14522170 76 34 116717 Leaves (Capsicum annuum, six weeks, SAMN15009947) 14703516 76 33 111568 Leaves (Capsicum annuum, six weeks, SAMN15009948) 15076618 81 35 112653 Leaves (Capsicum annuum, six weeks, SAMN15009949) 15696760 78 34 121330 Leaves (Capsicum annuum, six weeks, SAMN15009950) 14035662 78 35 114214 Leaves (Capsicum annuum, six weeks, SAMN15009951) 14233526 78 35 113362 Leaves (Capsicum annuum, six weeks, SAMN15009952) 14454132 79 35 121212 Leaves (Capsicum annuum, six weeks, SAMN15009953) 14263012 77 36 114742 Leaves (Capsicum annuum, six weeks, SAMN15009954) 14683136 80 36 119569 Leaves (Capsicum annuum, six weeks, SAMN15009955) 15906750 79 38 123467 Leaves (Capsicum annuum, six weeks, SAMN15009956) 16447136 79 38 122520 Leaves (Capsicum annuum, six weeks, SAMN15009957) 13001892 77 38 119307 Leaves (Capsicum annuum, six weeks, SAMN15009958) 12550250 74 35 112203 Leaves (Capsicum annuum, six weeks, SAMN15009959) 12823344 75 35 113054 Leaves (Capsicum annuum, six weeks, SAMN15009960) 14500092 76 35 115254 Leaves (Capsicum annuum, six weeks, SAMN15009961) 17044974 73 35 115733 Leaves (Capsicum annuum, six weeks, SAMN15009962) 15593584 76 35 114713 Leaves (Capsicum annuum, six weeks, SAMN15009963) 16235276 75 35 114736 Leaves (Capsicum annuum, six weeks, SAMN15009964) 14423984 78 37 115648 Leaves (Capsicum annuum, six weeks, SAMN15009965) 16165488 76 36 113908 Leaves (Capsicum annuum, six weeks, SAMN15009966) 15740112 77 35 117214 Leaves (Capsicum annuum, six weeks, SAMN15009967) 19078980 76 36 122318 Leaves (Capsicum annuum, six weeks, SAMN15009968) 17675638 78 36 119429 Leaves (Capsicum annuum, six weeks, SAMN15009969) 18395958 76 35 122782 Leaves (Capsicum annuum, six weeks, SAMN15009970) 17680436 77 35 123255 Leaves (Capsicum annuum, six weeks, SAMN15009971) 9653754 77 35 114616 Leaves (Capsicum annuum, six weeks, SAMN15009972) 910498 74 37 53513 Leaves (Capsicum annuum, six weeks, SAMN15009973) 12454886 74 35 111111 Leaves (Capsicum annuum, six weeks, SAMN15009974) 16622422 70 35 114676 Leaves (Capsicum annuum, six weeks, SAMN15009975) 22529664 70 35 118406 pepper hypocotyls (Capsicum annuum, SAMN19291609) 48875824 88 34 151633 pepper hypocotyls (Capsicum annuum, SAMN19291610) 55670782 88 35 154083 pepper hypocotyls (Capsicum annuum, SAMN19291611) 57623868 88 35 154405 pepper hypocotyls (Capsicum annuum, SAMN19291612) 50569748 89 35 146993 pepper hypocotyls (Capsicum annuum, SAMN19291613) 60191332 88 36 149404 pepper hypocotyls (Capsicum annuum, SAMN19291614) 52145472 88 32 141105 pepper hypocotyls (Capsicum annuum, SAMN19291615) 50933406 89 34 152630 pepper hypocotyls (Capsicum annuum, SAMN19291616) 44940366 88 36 152927 pepper hypocotyls (Capsicum annuum, SAMN19291617) 44841092 88 34 149680 pepper hypocotyls (Capsicum annuum, SAMN19291618) 117766644 85 26 152493 pepper hypocotyls (Capsicum annuum, SAMN19291619) 122388882 88 24 156510 pepper hypocotyls (Capsicum annuum, SAMN19291620) 135040784 86 25 155144 pepper hypocotyls (Capsicum annuum, SAMN19291621) 123030614 80 24 151941 pepper hypocotyls (Capsicum annuum, SAMN19291622) 149746942 80 21 151665 pepper hypocotyls (Capsicum annuum, SAMN19291623) 159356806 71 21 150706 Leaf (Capsicum annuum, 14days seedling, SAMN22208703) 210336190 88 34 168745 Leaf (Capsicum annuum, 14days seedling, SAMN22208704) 205754538 89 35 171956 5 leaves transcriptome sequence (Capsicum annuum, SAMN24198164) 141938024 92 35 161852 5 flowering_bud transcriptome sequence (Capsicum annuum, SAMN24198165) 132807028 92 35 176759 5 pericarp transcriptome sequence (Capsicum annuum, SAMN24198166) 140893248 88 34 149650 5 placenta transcriptome sequence (Capsicum annuum, SAMN24198167) 138270698 93 39 153982 5 roots transcriptome sequence (Capsicum annuum, SAMN24198168) 135791772 88 33 154728 floral buds (Capsicum annuum, SAMN25519087) 15678736 87 25 125815 floral buds (Capsicum annuum, SAMN25519088) 16840348 88 24 124492 seeds (Capsicum annuum, SAMN25519089) 22850540 92 24 140884 seeds (Capsicum annuum, SAMN25519090) 28022034 92 25 144441 seeds (Capsicum annuum, SAMN25519091) 24499342 92 25 141047 floral buds (Capsicum annuum, SAMN25519092) 13047832 87 24 119515 leaves (Capsicum annuum, SAMN25519093) 17817806 81 22 117236 pericarp (Capsicum annuum, SAMN25519094) 15136800 87 24 118465 roots (Capsicum annuum, SAMN25519095) 14075488 83 21 110947 shoots (Capsicum annuum, SAMN25519096) 13566268 83 23 115852 floral buds (Capsicum annuum, SAMN25519097) 13516824 87 25 121970 floral buds (Capsicum annuum, SAMN25519098) 16513806 88 25 122924 seeds (Capsicum annuum, SAMN25519099) 25153458 92 26 142401 seeds (Capsicum annuum, SAMN25519100) 26691770 92 25 144182 seeds (Capsicum annuum, SAMN25519101) 25900452 92 25 145105 floral buds (Capsicum annuum, SAMN25519102) 17112862 89 24 124670 leaves (Capsicum annuum, SAMN25519103) 15941846 82 23 114111 pericarp (Capsicum annuum, SAMN25519104) 12982148 87 25 114719 roots (Capsicum annuum, SAMN25519105) 14803060 86 21 112007 shoots (Capsicum annuum, SAMN25519106) 16075900 85 24 121934 anthers (Capsicum annuum, SAMN25519107) 31869848 93 21 133847 anthers (Capsicum annuum, SAMN25519108) 21478592 94 25 133370 embryos (Capsicum annuum, SAMN25519109) 30593200 94 21 137251 embryos (Capsicum annuum, SAMN25519110) 25817066 92 22 129025 embryos (Capsicum annuum, SAMN25519111) 21921428 93 21 124219 anthers (Capsicum annuum, SAMN25519112) 28990456 92 23 133456 anthers (Capsicum annuum, SAMN25519113) 35965092 93 25 146584 embryos (Capsicum annuum, SAMN25519114) 26227010 93 25 137811 embryos (Capsicum annuum, SAMN25519115) 34608202 92 22 139057 embryos (Capsicum annuum, SAMN25519116) 29198104 93 23 133160 Aggregate of all aligned samples 7296697050 83 29 211725 3734 75901 112 0.14 279221 No 50 33 274269 No 84 34 361671 No 82 34 316357 No 86 34 1177200 No 84 34 1169754 No 83 34 1268306 No 84 34 1307618 No 82 34 1298144 No 82 34 1443626 No 82 34 1540082 No 82 33 1525448 No 82 33 1683780 No 82 33 1142570 No 83 33 1223778 No 82 33 1392198 No 82 33 1409800 No 76 33 1409114 No 76 32 1578574 No 76 33 1313390 No 85 34 1316096 No 84 34 1433086 No 84 34 1554964 No 84 34 1534938 No 84 33 1686832 No 84 34 1401650 No 84 34 1392514 No 83 34 1526416 No 83 34 15296246 Yes 61 35 12438280 Yes 79 36 22529664 Yes 70 35 16622422 Yes 70 35 12454886 Yes 74 35 910498 Yes 74 37 9653754 Yes 77 35 17680436 Yes 77 35 18395958 Yes 76 35 17675638 Yes 78 36 14482770 Yes 81 36 19078980 Yes 76 36 15740112 Yes 77 35 16165488 Yes 76 36 14423984 Yes 78 37 16235276 Yes 75 35 15593584 Yes 76 35 17044974 Yes 73 35 14500092 Yes 76 35 12823344 Yes 75 35 12550250 Yes 74 35 14909512 Yes 77 36 13001892 Yes 77 38 16447136 Yes 79 38 15906750 Yes 79 38 14683136 Yes 80 36 14263012 Yes 77 36 14454132 Yes 79 35 14233526 Yes 78 35 14035662 Yes 78 35 15696760 Yes 78 34 15076618 Yes 81 35 14094964 Yes 78 36 14703516 Yes 76 33 14522170 Yes 76 34 15210574 Yes 78 38 16833384 Yes 79 39 16984952 Yes 80 39 15747566 Yes 80 40 15497384 Yes 79 39 18108586 Yes 80 39 18285916 Yes 81 38 17222052 Yes 79 38 15373384 Yes 78 36 16410010 Yes 80 38 15382104 Yes 79 37 19515140 Yes 81 37 18456192 Yes 79 37 18702928 Yes 81 37 14664770 Yes 80 37 17672324 Yes 78 37 16382686 Yes 63 35 16343544 Yes 64 35 18246692 Yes 64 35 14280396 Yes 79 36 18661140 Yes 66 36 19870890 Yes 64 36 19712084 Yes 63 36 18773836 Yes 69 35 15834264 Yes 65 35 16402032 Yes 65 35 18782148 Yes 70 35 16496920 Yes 68 35 18315250 Yes 69 35 16542142 Yes 67 34 11850188 Yes 80 36 18073054 Yes 68 34 19241082 Yes 64 35 17372420 Yes 62 34 17904896 Yes 63 35 15036678 Yes 62 35 16305002 Yes 65 36 15132354 Yes 66 37 17704516 Yes 66 37 19007342 Yes 67 35 17911516 Yes 66 35 13005714 Yes 79 36 14351142 Yes 78 35 117766644 No 85 26 44841092 No 88 34 44940366 No 88 36 50933406 No 89 34 52145472 No 88 32 60191332 No 88 36 50569748 No 89 35 57623868 No 88 35 159356806 No 71 21 149746942 No 80 21 123030614 No 80 24 135040784 No 86 25 122388882 No 88 24 55670782 No 88 35 48875824 No 88 34 44959984 No 90 39 48990456 No 88 36 57240232 No 89 33 54839484 No 89 33 49266018 No 86 33 52965580 No 88 34 61052092 No 89 34 46776882 No 89 35 41452358 No 93 38 57668756 No 92 37 42816910 No 91 31 46325970 No 93 39 45338798 No 93 39 46605930 No 92 39 43572784 No 90 32 40306478 No 86 33 51912510 No 88 33 47604528 No 91 35 40717282 No 91 34 44485218 No 92 35 51822836 No 88 32 41255866 No 92 34 47814546 No 86 35 13566268 No 83 23 14075488 No 83 21 15136800 No 87 24 17817806 No 81 22 24499342 No 92 25 13047832 No 87 24 28022034 No 92 25 29198104 No 93 23 34608202 No 92 22 26227010 No 93 25 35965092 No 93 25 28990456 No 92 23 21921428 No 93 21 25817066 No 92 22 30593200 No 94 21 21478592 No 94 25 31869848 No 93 21 22850540 No 92 24 16075900 No 85 24 14803060 No 86 21 12982148 No 87 25 15941846 No 82 23 17112862 No 89 24 25900452 No 92 25 26691770 No 92 25 25153458 No 92 26 16513806 No 88 25 13516824 No 87 25 16840348 No 88 24 15678736 No 87 25 86062 No 72 57 46312128 No 86 18 45956096 No 83 18 93783926 No 82 16 102576604 No 87 16 89789270 No 87 18 44496230 No 89 17 45928708 No 85 16 37167160 No 91 19 34164510 No 86 20 41015346 No 92 19 38484600 No 93 19 60517760 No 92 19 63661236 No 91 17 56450386 No 87 18 64486520 No 93 20 76023478 No 83 19 36691372 No 90 18 37253812 No 90 18 46941144 No 91 19 47066538 No 91 17 45942856 No 90 18 52781062 No 93 20 42903778 No 92 18 73290898 No 92 18 78335408 No 91 16 86264654 No 90 19 72669910 No 92 18 67474764 No 90 15 16011718 Yes 75 36 16444434 Yes 77 36 16930184 Yes 75 37 17779790 Yes 74 36 18875314 Yes 73 35 17079602 Yes 74 35 14453518 Yes 73 35 16602592 Yes 74 37 16560280 Yes 74 37 17590594 Yes 72 37 18704974 Yes 78 39 20844338 Yes 84 37 20611554 Yes 74 37 16251564 Yes 74 38 20217440 Yes 76 37 16223178 Yes 76 38 18364710 Yes 79 37 15348286 Yes 77 39 18162806 Yes 79 37 18600090 Yes 85 36 18783220 Yes 86 34 19516512 Yes 83 34 19964286 Yes 85 35 16856158 Yes 76 36 16833356 Yes 75 36 18801144 Yes 85 37 17097566 Yes 85 37 18145042 Yes 76 37 19459704 Yes 90 37 17968450 Yes 74 37 19269034 Yes 73 37 17806512 Yes 78 39 16133198 Yes 76 38 17914146 Yes 89 36 19959564 Yes 91 37 16150538 Yes 72 38 17285092 Yes 74 37 16216828 Yes 75 36 15364428 Yes 73 36 16418060 Yes 69 35 15074598 Yes 71 38 17735326 Yes 72 39 17166794 Yes 72 38 19515382 Yes 85 37 19986894 Yes 77 38 14660492 Yes 72 38 14786292 Yes 71 38 17075546 Yes 74 38 19356126 Yes 84 37 20118566 Yes 84 37 17553388 Yes 74 37 17612286 Yes 71 37 16672772 Yes 77 37 16369600 Yes 78 37 18430638 Yes 77 37 15946462 Yes 79 37 17427642 Yes 78 37 14432056 Yes 75 37 18681664 Yes 76 37 18714618 Yes 80 36 16277894 Yes 76 38 16902254 Yes 73 38 18558156 Yes 75 37 15556692 Yes 77 39 15241074 Yes 71 39 13105408 Yes 71 39 15020496 Yes 74 39 14864986 Yes 73 39 14262764 Yes 69 38 13898700 Yes 74 39 14618100 Yes 74 39 16319964 Yes 75 38 22388790 Yes 76 38 17883570 Yes 86 35 19094440 Yes 88 35 18869494 Yes 78 38 19403966 Yes 83 37 18292750 Yes 83 36 31923 11049610 4434151 87.3536 93.2331 78.127 91.0959 26765 22894 25944 21864 24701 20730 22309 18877 17219 14781 11525 9943 5637 4788 1257 945 26453 10249466 4377571 88 94 85 93 23386 22846 21977 20291 16047 10936 5570 1237 22397 21688 20758 18954 14905 10094 4803 952 25487 10127318 4377903 89 94 85 93 23087 22599 21807 20207 15994 10982 5569 1236 22027 21358 20415 18722 14741 10012 4750 935 34094 11309095 4356510 86 93 79 91 27475 26618 25341 22954 17799 12029 6088 1425 24153 23009 21806 19923 15637 10764 5322 1121 31105 10835341 4459344 87 93 79 91 25700 24902 23697 21500 16633 11046 5455 1196 22573 21674 20660 18918 14974 10117 4812 947 336 1187 294710 118956 336 336 330 99.68 98.72 1187 1176 1065 99.51 94.7 294710 279986 0 211917 118956 108825 105010 99.56 98.58